miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23792 5' -60.5 NC_005261.1 + 69359 0.66 0.687661
Target:  5'- gACGcGG-CCGCGCGCgCGCUGgaccUCGAGa -3'
miRNA:   3'- -UGCaCCaGGUGCGCGaGCGAC----GGCUU- -5'
23792 5' -60.5 NC_005261.1 + 2501 0.66 0.687661
Target:  5'- -gGUGGUCCGCGaGC-CGC-GCCGc- -3'
miRNA:   3'- ugCACCAGGUGCgCGaGCGaCGGCuu -5'
23792 5' -60.5 NC_005261.1 + 130635 0.66 0.687661
Target:  5'- cGCGcGGggCGCGCGUgCGCUcGCCGAc -3'
miRNA:   3'- -UGCaCCagGUGCGCGaGCGA-CGGCUu -5'
23792 5' -60.5 NC_005261.1 + 88047 0.66 0.687661
Target:  5'- ---cGGUCCagucACGCGCcugCGCcgGCCGAGc -3'
miRNA:   3'- ugcaCCAGG----UGCGCGa--GCGa-CGGCUU- -5'
23792 5' -60.5 NC_005261.1 + 102300 0.66 0.687661
Target:  5'- cGCG-GGUcguagCCGCGCGC-CGCgGCCGc- -3'
miRNA:   3'- -UGCaCCA-----GGUGCGCGaGCGaCGGCuu -5'
23792 5' -60.5 NC_005261.1 + 42804 0.66 0.677668
Target:  5'- aGCGUGcagacGUCCGCG-GC-CGCgccgGCCGGAg -3'
miRNA:   3'- -UGCAC-----CAGGUGCgCGaGCGa---CGGCUU- -5'
23792 5' -60.5 NC_005261.1 + 71215 0.66 0.667639
Target:  5'- cGCGaUGGUgCGCGCGCgcaCGCgGCCc-- -3'
miRNA:   3'- -UGC-ACCAgGUGCGCGa--GCGaCGGcuu -5'
23792 5' -60.5 NC_005261.1 + 76594 0.66 0.647504
Target:  5'- aGCG-GG-UgGCGCGCgCGCUGCCGc- -3'
miRNA:   3'- -UGCaCCaGgUGCGCGaGCGACGGCuu -5'
23792 5' -60.5 NC_005261.1 + 32235 0.66 0.637414
Target:  5'- -gGUGGccuUCUGCGCgGCcgCGCUGCUGGAg -3'
miRNA:   3'- ugCACC---AGGUGCG-CGa-GCGACGGCUU- -5'
23792 5' -60.5 NC_005261.1 + 60195 0.67 0.627321
Target:  5'- gGCGgagaaGUCCGCGCGCgCGCUcccGCCGc- -3'
miRNA:   3'- -UGCac---CAGGUGCGCGaGCGA---CGGCuu -5'
23792 5' -60.5 NC_005261.1 + 104202 0.67 0.627321
Target:  5'- gACG-GcGUCCAgGCGCUCGC-GCgCGGc -3'
miRNA:   3'- -UGCaC-CAGGUgCGCGAGCGaCG-GCUu -5'
23792 5' -60.5 NC_005261.1 + 54809 0.67 0.624294
Target:  5'- cGCGUaggccaccaGGUCCGCGUcauacgcgggcaggGCUaGCUGCCGGc -3'
miRNA:   3'- -UGCA---------CCAGGUGCG--------------CGAgCGACGGCUu -5'
23792 5' -60.5 NC_005261.1 + 21388 0.67 0.621267
Target:  5'- gGCGcGGUCCAcuuugagugcguuccCGCGC-CGCgccgGCCGGu -3'
miRNA:   3'- -UGCaCCAGGU---------------GCGCGaGCGa---CGGCUu -5'
23792 5' -60.5 NC_005261.1 + 29815 0.67 0.617232
Target:  5'- gGCGcGGgcgCC-CGCGCcgCGCUcGCCGAGc -3'
miRNA:   3'- -UGCaCCa--GGuGCGCGa-GCGA-CGGCUU- -5'
23792 5' -60.5 NC_005261.1 + 55481 0.67 0.617232
Target:  5'- cACGUccGGUCCgACGCGCggcgCGCU-CUGGAg -3'
miRNA:   3'- -UGCA--CCAGG-UGCGCGa---GCGAcGGCUU- -5'
23792 5' -60.5 NC_005261.1 + 10236 0.67 0.617232
Target:  5'- gGCG-GGcCCGCGCaCUCGCcGCCGc- -3'
miRNA:   3'- -UGCaCCaGGUGCGcGAGCGaCGGCuu -5'
23792 5' -60.5 NC_005261.1 + 100672 0.67 0.617232
Target:  5'- cGCGgGGUUCGCGCGCgagugcacCGCgGCCGc- -3'
miRNA:   3'- -UGCaCCAGGUGCGCGa-------GCGaCGGCuu -5'
23792 5' -60.5 NC_005261.1 + 64910 0.67 0.617232
Target:  5'- cGCGUGGUUCagcgcgGCGUGCUCcuGCUcGCCGc- -3'
miRNA:   3'- -UGCACCAGG------UGCGCGAG--CGA-CGGCuu -5'
23792 5' -60.5 NC_005261.1 + 106903 0.67 0.607153
Target:  5'- uGCGUcGUCCGCGcCGCggcgCGCUGCaGGg -3'
miRNA:   3'- -UGCAcCAGGUGC-GCGa---GCGACGgCUu -5'
23792 5' -60.5 NC_005261.1 + 86892 0.67 0.597092
Target:  5'- cGCGcccUGGUCCGCGCGCggCGCggacCCGc- -3'
miRNA:   3'- -UGC---ACCAGGUGCGCGa-GCGac--GGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.