miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 99812 0.66 0.864907
Target:  5'- gCGAaCAGC-GCGCCGuccGCCGGGUCg -3'
miRNA:   3'- -GCUaGUCGcCGUGGUccuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 396 0.66 0.864907
Target:  5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 14166 0.66 0.864907
Target:  5'- gCGAaCGGCGcGCGuCUcGGGGCgCGGGUCa -3'
miRNA:   3'- -GCUaGUCGC-CGU-GGuCCUUG-GUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 138067 0.66 0.864907
Target:  5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 57884 0.66 0.864907
Target:  5'- -aGUCGGcCGGCACgGGGAcgGCCAccGcGUCg -3'
miRNA:   3'- gcUAGUC-GCCGUGgUCCU--UGGU--C-CAG- -5'
23793 3' -56.9 NC_005261.1 + 84304 0.66 0.864907
Target:  5'- ---cCGGCGGCGCCGaaGGCgUAGGUCg -3'
miRNA:   3'- gcuaGUCGCCGUGGUccUUG-GUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 75319 0.66 0.857252
Target:  5'- -cGUCGGCGGCGCgC-GGAGCCcuGUg -3'
miRNA:   3'- gcUAGUCGCCGUG-GuCCUUGGucCAg -5'
23793 3' -56.9 NC_005261.1 + 23535 0.66 0.857252
Target:  5'- gCGAgcggCAGaGGCGgCAGGAGCCgucgcAGGUg -3'
miRNA:   3'- -GCUa---GUCgCCGUgGUCCUUGG-----UCCAg -5'
23793 3' -56.9 NC_005261.1 + 114069 0.66 0.857252
Target:  5'- gCGGcUCAGCGGCGCC--GAGCUGGaGUUu -3'
miRNA:   3'- -GCU-AGUCGCCGUGGucCUUGGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 24190 0.66 0.857252
Target:  5'- -cGUCGGCgaGGCuCCAGGAucgucgGCgGGGUCc -3'
miRNA:   3'- gcUAGUCG--CCGuGGUCCU------UGgUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 76238 0.66 0.857252
Target:  5'- aCGAgacGCGGCGCCu-GAGCCAGuUCa -3'
miRNA:   3'- -GCUaguCGCCGUGGucCUUGGUCcAG- -5'
23793 3' -56.9 NC_005261.1 + 36289 0.66 0.857252
Target:  5'- gGcgCGGcCGGgACCGGGAaACUAGGcCa -3'
miRNA:   3'- gCuaGUC-GCCgUGGUCCU-UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 4400 0.66 0.849391
Target:  5'- cCGggCGGCGGCggcgcgcuGCCGGG--CCAGGcCu -3'
miRNA:   3'- -GCuaGUCGCCG--------UGGUCCuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 117907 0.66 0.849391
Target:  5'- gGGUgAGCGGCugCgcGGGAACgaAGGcCg -3'
miRNA:   3'- gCUAgUCGCCGugG--UCCUUGg-UCCaG- -5'
23793 3' -56.9 NC_005261.1 + 121632 0.66 0.841332
Target:  5'- cCGcUCGGCGGCcgccGCCGGcGAGCgCGGGc- -3'
miRNA:   3'- -GCuAGUCGCCG----UGGUC-CUUG-GUCCag -5'
23793 3' -56.9 NC_005261.1 + 83748 0.66 0.841332
Target:  5'- uCGAggUGGCGGCgcGCCAcG-GCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcCuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 15025 0.66 0.841332
Target:  5'- -uGUCGGCgGGUGCCGGGGGCguagcgggggGGGUCg -3'
miRNA:   3'- gcUAGUCG-CCGUGGUCCUUGg---------UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 2653 0.66 0.841332
Target:  5'- gCGggCAGCGGCggcucccgccgcGCUGGGGACCcGG-Cg -3'
miRNA:   3'- -GCuaGUCGCCG------------UGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 16242 0.66 0.841332
Target:  5'- gCGGUCGaCGuccGCGCCGGGGccGCCGGGg- -3'
miRNA:   3'- -GCUAGUcGC---CGUGGUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 64 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.