Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23793 | 3' | -56.9 | NC_005261.1 | + | 4400 | 0.66 | 0.849391 |
Target: 5'- cCGggCGGCGGCggcgcgcuGCCGGG--CCAGGcCu -3' miRNA: 3'- -GCuaGUCGCCG--------UGGUCCuuGGUCCaG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 24190 | 0.66 | 0.857252 |
Target: 5'- -cGUCGGCgaGGCuCCAGGAucgucgGCgGGGUCc -3' miRNA: 3'- gcUAGUCG--CCGuGGUCCU------UGgUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 14166 | 0.66 | 0.864907 |
Target: 5'- gCGAaCGGCGcGCGuCUcGGGGCgCGGGUCa -3' miRNA: 3'- -GCUaGUCGC-CGU-GGuCCUUG-GUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 15025 | 0.66 | 0.841332 |
Target: 5'- -uGUCGGCgGGUGCCGGGGGCguagcgggggGGGUCg -3' miRNA: 3'- gcUAGUCG-CCGUGGUCCUUGg---------UCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 36289 | 0.66 | 0.857252 |
Target: 5'- gGcgCGGcCGGgACCGGGAaACUAGGcCa -3' miRNA: 3'- gCuaGUC-GCCgUGGUCCU-UGGUCCaG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 121632 | 0.66 | 0.841332 |
Target: 5'- cCGcUCGGCGGCcgccGCCGGcGAGCgCGGGc- -3' miRNA: 3'- -GCuAGUCGCCG----UGGUC-CUUG-GUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 76238 | 0.66 | 0.857252 |
Target: 5'- aCGAgacGCGGCGCCu-GAGCCAGuUCa -3' miRNA: 3'- -GCUaguCGCCGUGGucCUUGGUCcAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 1718 | 0.66 | 0.824647 |
Target: 5'- uCGcgCGGCGGCA-CGGGcACCGcGGUg -3' miRNA: 3'- -GCuaGUCGCCGUgGUCCuUGGU-CCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 23535 | 0.66 | 0.857252 |
Target: 5'- gCGAgcggCAGaGGCGgCAGGAGCCgucgcAGGUg -3' miRNA: 3'- -GCUa---GUCgCCGUgGUCCUUGG-----UCCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 83748 | 0.66 | 0.841332 |
Target: 5'- uCGAggUGGCGGCgcGCCAcG-GCCGGGUCg -3' miRNA: 3'- -GCUa-GUCGCCG--UGGUcCuUGGUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 114069 | 0.66 | 0.857252 |
Target: 5'- gCGGcUCAGCGGCGCC--GAGCUGGaGUUu -3' miRNA: 3'- -GCU-AGUCGCCGUGGucCUUGGUC-CAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 16242 | 0.66 | 0.841332 |
Target: 5'- gCGGUCGaCGuccGCGCCGGGGccGCCGGGg- -3' miRNA: 3'- -GCUAGUcGC---CGUGGUCCU--UGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 137747 | 0.66 | 0.833082 |
Target: 5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3' miRNA: 3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 22653 | 0.66 | 0.828042 |
Target: 5'- aCGcgCuGGCGGCGCCuGGGcggcgcccgagugccGCCGGGg- -3' miRNA: 3'- -GCuaG-UCGCCGUGGuCCU---------------UGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 64 | 0.66 | 0.833082 |
Target: 5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3' miRNA: 3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 117907 | 0.66 | 0.849391 |
Target: 5'- gGGUgAGCGGCugCgcGGGAACgaAGGcCg -3' miRNA: 3'- gCUAgUCGCCGugG--UCCUUGg-UCCaG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 119654 | 0.66 | 0.824647 |
Target: 5'- cCGG-CGGCGcGCGCCuGGAGCuCuGGUUc -3' miRNA: 3'- -GCUaGUCGC-CGUGGuCCUUG-GuCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 83845 | 0.66 | 0.823794 |
Target: 5'- gCGggCcGCGGCcccgcugggcuggGCCGGGccggacGCCGGGUCa -3' miRNA: 3'- -GCuaGuCGCCG-------------UGGUCCu-----UGGUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 2653 | 0.66 | 0.841332 |
Target: 5'- gCGggCAGCGGCggcucccgccgcGCUGGGGACCcGG-Cg -3' miRNA: 3'- -GCuaGUCGCCG------------UGGUCCUUGGuCCaG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 75319 | 0.66 | 0.857252 |
Target: 5'- -cGUCGGCGGCGCgC-GGAGCCcuGUg -3' miRNA: 3'- gcUAGUCGCCGUG-GuCCUUGGucCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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