Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23793 | 3' | -56.9 | NC_005261.1 | + | 75319 | 0.66 | 0.857252 |
Target: 5'- -cGUCGGCGGCGCgC-GGAGCCcuGUg -3' miRNA: 3'- gcUAGUCGCCGUG-GuCCUUGGucCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 1718 | 0.66 | 0.824647 |
Target: 5'- uCGcgCGGCGGCA-CGGGcACCGcGGUg -3' miRNA: 3'- -GCuaGUCGCCGUgGUCCuUGGU-CCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 396 | 0.66 | 0.864907 |
Target: 5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3' miRNA: 3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 57884 | 0.66 | 0.864907 |
Target: 5'- -aGUCGGcCGGCACgGGGAcgGCCAccGcGUCg -3' miRNA: 3'- gcUAGUC-GCCGUGgUCCU--UGGU--C-CAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 84304 | 0.66 | 0.864907 |
Target: 5'- ---cCGGCGGCGCCGaaGGCgUAGGUCg -3' miRNA: 3'- gcuaGUCGCCGUGGUccUUG-GUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 14166 | 0.66 | 0.864907 |
Target: 5'- gCGAaCGGCGcGCGuCUcGGGGCgCGGGUCa -3' miRNA: 3'- -GCUaGUCGC-CGU-GGuCCUUG-GUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 97073 | 0.67 | 0.807257 |
Target: 5'- aCGAUCcGCgucggaGGCGCCGGcuGGGCCGGGg- -3' miRNA: 3'- -GCUAGuCG------CCGUGGUC--CUUGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 27492 | 0.67 | 0.789227 |
Target: 5'- ----gGGC-GCACCuGGAccGCCAGGUCu -3' miRNA: 3'- gcuagUCGcCGUGGuCCU--UGGUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 33289 | 0.67 | 0.789227 |
Target: 5'- cCGGUCcGUgGGCACCccgucgcGGGACCAGGa- -3' miRNA: 3'- -GCUAGuCG-CCGUGGu------CCUUGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 105276 | 0.67 | 0.789227 |
Target: 5'- gCGggCGGCaGCGCCGGcGAGCCcGGg- -3' miRNA: 3'- -GCuaGUCGcCGUGGUC-CUUGGuCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 125147 | 0.67 | 0.798318 |
Target: 5'- aGcAUCGcCGGCGCCGugauuGGGGCCGcGGUCa -3' miRNA: 3'- gC-UAGUcGCCGUGGU-----CCUUGGU-CCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 26087 | 0.67 | 0.801912 |
Target: 5'- gCGG-CAGCGGCGgcagcagaggcagauCCAGcGGCCGGGUa -3' miRNA: 3'- -GCUaGUCGCCGU---------------GGUCcUUGGUCCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 69309 | 0.67 | 0.798318 |
Target: 5'- ---cCGGUGGCGgCGGGAGCgGGGg- -3' miRNA: 3'- gcuaGUCGCCGUgGUCCUUGgUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 24558 | 0.67 | 0.816036 |
Target: 5'- ----gGGCGGCGCCAGGucCCAGc-- -3' miRNA: 3'- gcuagUCGCCGUGGUCCuuGGUCcag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 81346 | 0.67 | 0.816036 |
Target: 5'- -cGUCGGCGGgGCgGGGGcuugcggggggcGCCGGGcUCg -3' miRNA: 3'- gcUAGUCGCCgUGgUCCU------------UGGUCC-AG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 59614 | 0.67 | 0.798318 |
Target: 5'- gGcgCGGCGgaugaGCGCCAGG-ACCucgcGGUCg -3' miRNA: 3'- gCuaGUCGC-----CGUGGUCCuUGGu---CCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 1058 | 0.67 | 0.779995 |
Target: 5'- -cGUUAGCGGCGCgGGGGGcuggccccgcuCCAGGg- -3' miRNA: 3'- gcUAGUCGCCGUGgUCCUU-----------GGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 47705 | 0.67 | 0.789227 |
Target: 5'- cCGcGUCGGCGGCGUCGGGGGCCuccUCg -3' miRNA: 3'- -GC-UAGUCGCCGUGGUCCUUGGuccAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 120925 | 0.67 | 0.798318 |
Target: 5'- uCGAUCcGCGaGCGCCGGGcGCgggaAGGUg -3' miRNA: 3'- -GCUAGuCGC-CGUGGUCCuUGg---UCCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 107488 | 0.68 | 0.722116 |
Target: 5'- gCGAUCAGCGGCAgCAGcugcgccACgCAGGcCg -3' miRNA: 3'- -GCUAGUCGCCGUgGUCcu-----UG-GUCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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