miRNA display CGI


Results 61 - 80 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 15177 0.69 0.702101
Target:  5'- gCGG-CGGCGGCGCCcgcGGGAaacGCCGccaucgcgcGGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGG---UCCU---UGGU---------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 105010 0.69 0.702101
Target:  5'- gCGGUCGG-GGCGCCAGGG--CGGuGUCc -3'
miRNA:   3'- -GCUAGUCgCCGUGGUCCUugGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 129654 0.7 0.610115
Target:  5'- gCGG-CGGCGGCGgCAGGGgcgggACCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUgGUCCU-----UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 97535 0.7 0.630646
Target:  5'- gCGAUCGGCGGCcCCGGcGGuGCCGGcccGUCc -3'
miRNA:   3'- -GCUAGUCGCCGuGGUC-CU-UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 63362 0.7 0.630646
Target:  5'- ---aCGGUGGCGCggugCGGGuguGCCGGGUCg -3'
miRNA:   3'- gcuaGUCGCCGUG----GUCCu--UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 44611 0.7 0.640917
Target:  5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3'
miRNA:   3'- gCUAGuCGcCGUGGUCC----UugGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 59019 0.7 0.640917
Target:  5'- ---cCAGCGGCgccGCCAGGAA-CGGGUg -3'
miRNA:   3'- gcuaGUCGCCG---UGGUCCUUgGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 93675 0.7 0.640917
Target:  5'- gCGggCGGCGGCGCCGGcGGggcGCCggcGGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGGUC-CU---UGG---UCCAg -5'
23793 3' -56.9 NC_005261.1 + 107566 0.7 0.650155
Target:  5'- aCGG-CAGCGGCGaagUAGGGcgcgaagGCCGGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUg--GUCCU-------UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 69764 0.7 0.651181
Target:  5'- gCGGggGGCGGCGCCGGGGACUg---- -3'
miRNA:   3'- -GCUagUCGCCGUGGUCCUUGGuccag -5'
23793 3' -56.9 NC_005261.1 + 70339 0.71 0.549147
Target:  5'- aCGcGUCgAGCGG-GCCGGGGACCGGGa- -3'
miRNA:   3'- -GC-UAG-UCGCCgUGGUCCUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 65326 0.71 0.55618
Target:  5'- cCGGgcaCAGCGGCACCGGGAuguugccguugaugACgCGGGg- -3'
miRNA:   3'- -GCUa--GUCGCCGUGGUCCU--------------UG-GUCCag -5'
23793 3' -56.9 NC_005261.1 + 33743 0.71 0.559203
Target:  5'- --cUCGcGCGGCGCCGGG-GCCGGGcCc -3'
miRNA:   3'- gcuAGU-CGCCGUGGUCCuUGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 102275 0.71 0.579461
Target:  5'- cCGGUCGGCcugccGCGCCAGcGGCCgcGGGUCg -3'
miRNA:   3'- -GCUAGUCGc----CGUGGUCcUUGG--UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 15264 0.72 0.490199
Target:  5'- gCGAUCgccccGGCGGCGCCGccGGGGCgCGcGGUCg -3'
miRNA:   3'- -GCUAG-----UCGCCGUGGU--CCUUG-GU-CCAG- -5'
23793 3' -56.9 NC_005261.1 + 95736 0.72 0.53616
Target:  5'- gCGcUCAGCGGCGCCgccgccgccgccggGGGcGCCGGGa- -3'
miRNA:   3'- -GCuAGUCGCCGUGG--------------UCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 88182 0.72 0.529212
Target:  5'- gCGAcgcCGGCGGCGCCGGcGAGgCGGGcCg -3'
miRNA:   3'- -GCUa--GUCGCCGUGGUC-CUUgGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 109068 0.72 0.528222
Target:  5'- ---cCAGCGGCGCCucGGcgaucaugccguuGGCCAGGUCc -3'
miRNA:   3'- gcuaGUCGCCGUGGu-CC-------------UUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 111090 0.72 0.509549
Target:  5'- uGGUguGgGGgGCCGGGGACUGGGUg -3'
miRNA:   3'- gCUAguCgCCgUGGUCCUUGGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 33516 0.72 0.499833
Target:  5'- gCGG-CGGCGGCACCgcuggccccGGGAgcACCAGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUGG---------UCCU--UGGUCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.