miRNA display CGI


Results 81 - 90 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 119654 0.66 0.824647
Target:  5'- cCGG-CGGCGcGCGCCuGGAGCuCuGGUUc -3'
miRNA:   3'- -GCUaGUCGC-CGUGGuCCUUG-GuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 22653 0.66 0.828042
Target:  5'- aCGcgCuGGCGGCGCCuGGGcggcgcccgagugccGCCGGGg- -3'
miRNA:   3'- -GCuaG-UCGCCGUGGuCCU---------------UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 64 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5'
23793 3' -56.9 NC_005261.1 + 137747 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5'
23793 3' -56.9 NC_005261.1 + 2653 0.66 0.841332
Target:  5'- gCGggCAGCGGCggcucccgccgcGCUGGGGACCcGG-Cg -3'
miRNA:   3'- -GCuaGUCGCCG------------UGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 15025 0.66 0.841332
Target:  5'- -uGUCGGCgGGUGCCGGGGGCguagcgggggGGGUCg -3'
miRNA:   3'- gcUAGUCG-CCGUGGUCCUUGg---------UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 83748 0.66 0.841332
Target:  5'- uCGAggUGGCGGCgcGCCAcG-GCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcCuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 16242 0.66 0.841332
Target:  5'- gCGGUCGaCGuccGCGCCGGGGccGCCGGGg- -3'
miRNA:   3'- -GCUAGUcGC---CGUGGUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 121632 0.66 0.841332
Target:  5'- cCGcUCGGCGGCcgccGCCGGcGAGCgCGGGc- -3'
miRNA:   3'- -GCuAGUCGCCG----UGGUC-CUUG-GUCCag -5'
23793 3' -56.9 NC_005261.1 + 14752 0.66 0.823794
Target:  5'- gCGAUCGGCGccGCGCCgcgacagGGGGGCCgccccgcgcAGGUg -3'
miRNA:   3'- -GCUAGUCGC--CGUGG-------UCCUUGG---------UCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.