miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 129654 0.7 0.610115
Target:  5'- gCGG-CGGCGGCGgCAGGGgcgggACCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUgGUCCU-----UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 97535 0.7 0.630646
Target:  5'- gCGAUCGGCGGCcCCGGcGGuGCCGGcccGUCc -3'
miRNA:   3'- -GCUAGUCGCCGuGGUC-CU-UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 63362 0.7 0.630646
Target:  5'- ---aCGGUGGCGCggugCGGGuguGCCGGGUCg -3'
miRNA:   3'- gcuaGUCGCCGUG----GUCCu--UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 44611 0.7 0.640917
Target:  5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3'
miRNA:   3'- gCUAGuCGcCGUGGUCC----UugGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 59019 0.7 0.640917
Target:  5'- ---cCAGCGGCgccGCCAGGAA-CGGGUg -3'
miRNA:   3'- gcuaGUCGCCG---UGGUCCUUgGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 93675 0.7 0.640917
Target:  5'- gCGggCGGCGGCGCCGGcGGggcGCCggcGGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGGUC-CU---UGG---UCCAg -5'
23793 3' -56.9 NC_005261.1 + 107566 0.7 0.650155
Target:  5'- aCGG-CAGCGGCGaagUAGGGcgcgaagGCCGGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUg--GUCCU-------UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 69764 0.7 0.651181
Target:  5'- gCGGggGGCGGCGCCGGGGACUg---- -3'
miRNA:   3'- -GCUagUCGCCGUGGUCCUUGGuccag -5'
23793 3' -56.9 NC_005261.1 + 13145 0.69 0.658358
Target:  5'- uCGGUgaCGGCGcGCACCAGGcgguccgaggugacGACCAGGc- -3'
miRNA:   3'- -GCUA--GUCGC-CGUGGUCC--------------UUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 103858 0.69 0.660406
Target:  5'- gCGAgccgCGGCGGCGgCGGGGcggcgccGCCGGG-Cg -3'
miRNA:   3'- -GCUa---GUCGCCGUgGUCCU-------UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 72839 0.69 0.66143
Target:  5'- gCGGUCGGCcagGGCGCCAGcgcCCAGG-Cg -3'
miRNA:   3'- -GCUAGUCG---CCGUGGUCcuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 65670 0.69 0.66143
Target:  5'- gCGcgCAGCGcCGCCAGc-ACCGGGUCc -3'
miRNA:   3'- -GCuaGUCGCcGUGGUCcuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 92633 0.69 0.671655
Target:  5'- gCGAg-AGCGGgACCGGGA-CCGGGa- -3'
miRNA:   3'- -GCUagUCGCCgUGGUCCUuGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 15061 0.69 0.681848
Target:  5'- gGGUC-GCGGCGgggUCGGGggUCAGGcUCg -3'
miRNA:   3'- gCUAGuCGCCGU---GGUCCuuGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 126942 0.69 0.681848
Target:  5'- gCGGcCAGgGGCGCCGGGcGCgGGGg- -3'
miRNA:   3'- -GCUaGUCgCCGUGGUCCuUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 130170 0.69 0.691999
Target:  5'- -cGUCAGCGGCGCCGGcAGCaGGGa- -3'
miRNA:   3'- gcUAGUCGCCGUGGUCcUUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 15917 0.69 0.691999
Target:  5'- cCGcgCAGcCGGgGCCGGG-GCCGGGg- -3'
miRNA:   3'- -GCuaGUC-GCCgUGGUCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 74495 0.69 0.699076
Target:  5'- gGAUCucggcgcucuucggGGCGGCGCCGGG-GCCAuGG-Cg -3'
miRNA:   3'- gCUAG--------------UCGCCGUGGUCCuUGGU-CCaG- -5'
23793 3' -56.9 NC_005261.1 + 15177 0.69 0.702101
Target:  5'- gCGG-CGGCGGCGCCcgcGGGAaacGCCGccaucgcgcGGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGG---UCCU---UGGU---------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 105010 0.69 0.702101
Target:  5'- gCGGUCGG-GGCGCCAGGG--CGGuGUCc -3'
miRNA:   3'- -GCUAGUCgCCGUGGUCCUugGUC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.