miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 29580 0.69 0.712142
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 72690 0.68 0.722116
Target:  5'- gCGAacCGGC-GCGCCAGGuccGCCAGcGUCg -3'
miRNA:   3'- -GCUa-GUCGcCGUGGUCCu--UGGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 30999 0.68 0.722116
Target:  5'- -aGUCGGcCGGgGCCAGGGGCCcGG-Cg -3'
miRNA:   3'- gcUAGUC-GCCgUGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 80886 0.68 0.722116
Target:  5'- gCGGgcuUCAGCGGCGCCucccAGGGGuCCucgucgcGGUCg -3'
miRNA:   3'- -GCU---AGUCGCCGUGG----UCCUU-GGu------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 92473 0.68 0.722116
Target:  5'- gGAUgAGCGGCACCGcgagcucgcGGAcggcgGCCAGcucGUCa -3'
miRNA:   3'- gCUAgUCGCCGUGGU---------CCU-----UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 107488 0.68 0.722116
Target:  5'- gCGAUCAGCGGCAgCAGcugcgccACgCAGGcCg -3'
miRNA:   3'- -GCUAGUCGCCGUgGUCcu-----UG-GUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 82050 0.68 0.74182
Target:  5'- -cGUCAGCGcGgGCCAcGucGCCGGGUCg -3'
miRNA:   3'- gcUAGUCGC-CgUGGU-CcuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 93354 0.68 0.74182
Target:  5'- gCGcgCAGCGcGCGCCAGuGcGCCGGcGUg -3'
miRNA:   3'- -GCuaGUCGC-CGUGGUC-CuUGGUC-CAg -5'
23793 3' -56.9 NC_005261.1 + 14921 0.68 0.761137
Target:  5'- ---aCAGgGGCACCAGGAucgacGCCAGc-- -3'
miRNA:   3'- gcuaGUCgCCGUGGUCCU-----UGGUCcag -5'
23793 3' -56.9 NC_005261.1 + 78623 0.68 0.761137
Target:  5'- uGGUCGG-GGCGCCAGGuccGCCGaGUUc -3'
miRNA:   3'- gCUAGUCgCCGUGGUCCu--UGGUcCAG- -5'
23793 3' -56.9 NC_005261.1 + 121941 0.68 0.761137
Target:  5'- --uUCAGCaGCGCCAGcuuGAACCAGcUCg -3'
miRNA:   3'- gcuAGUCGcCGUGGUC---CUUGGUCcAG- -5'
23793 3' -56.9 NC_005261.1 + 1058 0.67 0.779995
Target:  5'- -cGUUAGCGGCGCgGGGGGcuggccccgcuCCAGGg- -3'
miRNA:   3'- gcUAGUCGCCGUGgUCCUU-----------GGUCCag -5'
23793 3' -56.9 NC_005261.1 + 47705 0.67 0.789227
Target:  5'- cCGcGUCGGCGGCGUCGGGGGCCuccUCg -3'
miRNA:   3'- -GC-UAGUCGCCGUGGUCCUUGGuccAG- -5'
23793 3' -56.9 NC_005261.1 + 105276 0.67 0.789227
Target:  5'- gCGggCGGCaGCGCCGGcGAGCCcGGg- -3'
miRNA:   3'- -GCuaGUCGcCGUGGUC-CUUGGuCCag -5'
23793 3' -56.9 NC_005261.1 + 33289 0.67 0.789227
Target:  5'- cCGGUCcGUgGGCACCccgucgcGGGACCAGGa- -3'
miRNA:   3'- -GCUAGuCG-CCGUGGu------CCUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 27492 0.67 0.789227
Target:  5'- ----gGGC-GCACCuGGAccGCCAGGUCu -3'
miRNA:   3'- gcuagUCGcCGUGGuCCU--UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 59614 0.67 0.798318
Target:  5'- gGcgCGGCGgaugaGCGCCAGG-ACCucgcGGUCg -3'
miRNA:   3'- gCuaGUCGC-----CGUGGUCCuUGGu---CCAG- -5'
23793 3' -56.9 NC_005261.1 + 69309 0.67 0.798318
Target:  5'- ---cCGGUGGCGgCGGGAGCgGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUgGUCCUUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 120925 0.67 0.798318
Target:  5'- uCGAUCcGCGaGCGCCGGGcGCgggaAGGUg -3'
miRNA:   3'- -GCUAGuCGC-CGUGGUCCuUGg---UCCAg -5'
23793 3' -56.9 NC_005261.1 + 125147 0.67 0.798318
Target:  5'- aGcAUCGcCGGCGCCGugauuGGGGCCGcGGUCa -3'
miRNA:   3'- gC-UAGUcGCCGUGGU-----CCUUGGU-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.