miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 26087 0.67 0.801912
Target:  5'- gCGG-CAGCGGCGgcagcagaggcagauCCAGcGGCCGGGUa -3'
miRNA:   3'- -GCUaGUCGCCGU---------------GGUCcUUGGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 97073 0.67 0.807257
Target:  5'- aCGAUCcGCgucggaGGCGCCGGcuGGGCCGGGg- -3'
miRNA:   3'- -GCUAGuCG------CCGUGGUC--CUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 24558 0.67 0.816036
Target:  5'- ----gGGCGGCGCCAGGucCCAGc-- -3'
miRNA:   3'- gcuagUCGCCGUGGUCCuuGGUCcag -5'
23793 3' -56.9 NC_005261.1 + 81346 0.67 0.816036
Target:  5'- -cGUCGGCGGgGCgGGGGcuugcggggggcGCCGGGcUCg -3'
miRNA:   3'- gcUAGUCGCCgUGgUCCU------------UGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 14752 0.66 0.823794
Target:  5'- gCGAUCGGCGccGCGCCgcgacagGGGGGCCgccccgcgcAGGUg -3'
miRNA:   3'- -GCUAGUCGC--CGUGG-------UCCUUGG---------UCCAg -5'
23793 3' -56.9 NC_005261.1 + 83845 0.66 0.823794
Target:  5'- gCGggCcGCGGCcccgcugggcuggGCCGGGccggacGCCGGGUCa -3'
miRNA:   3'- -GCuaGuCGCCG-------------UGGUCCu-----UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 119654 0.66 0.824647
Target:  5'- cCGG-CGGCGcGCGCCuGGAGCuCuGGUUc -3'
miRNA:   3'- -GCUaGUCGC-CGUGGuCCUUG-GuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 1718 0.66 0.824647
Target:  5'- uCGcgCGGCGGCA-CGGGcACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUgGUCCuUGGU-CCAg -5'
23793 3' -56.9 NC_005261.1 + 22653 0.66 0.828042
Target:  5'- aCGcgCuGGCGGCGCCuGGGcggcgcccgagugccGCCGGGg- -3'
miRNA:   3'- -GCuaG-UCGCCGUGGuCCU---------------UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 64 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5'
23793 3' -56.9 NC_005261.1 + 137747 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5'
23793 3' -56.9 NC_005261.1 + 121632 0.66 0.841332
Target:  5'- cCGcUCGGCGGCcgccGCCGGcGAGCgCGGGc- -3'
miRNA:   3'- -GCuAGUCGCCG----UGGUC-CUUG-GUCCag -5'
23793 3' -56.9 NC_005261.1 + 16242 0.66 0.841332
Target:  5'- gCGGUCGaCGuccGCGCCGGGGccGCCGGGg- -3'
miRNA:   3'- -GCUAGUcGC---CGUGGUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 83748 0.66 0.841332
Target:  5'- uCGAggUGGCGGCgcGCCAcG-GCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcCuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 15025 0.66 0.841332
Target:  5'- -uGUCGGCgGGUGCCGGGGGCguagcgggggGGGUCg -3'
miRNA:   3'- gcUAGUCG-CCGUGGUCCUUGg---------UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 2653 0.66 0.841332
Target:  5'- gCGggCAGCGGCggcucccgccgcGCUGGGGACCcGG-Cg -3'
miRNA:   3'- -GCuaGUCGCCG------------UGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 117907 0.66 0.849391
Target:  5'- gGGUgAGCGGCugCgcGGGAACgaAGGcCg -3'
miRNA:   3'- gCUAgUCGCCGugG--UCCUUGg-UCCaG- -5'
23793 3' -56.9 NC_005261.1 + 4400 0.66 0.849391
Target:  5'- cCGggCGGCGGCggcgcgcuGCCGGG--CCAGGcCu -3'
miRNA:   3'- -GCuaGUCGCCG--------UGGUCCuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 36289 0.66 0.857252
Target:  5'- gGcgCGGcCGGgACCGGGAaACUAGGcCa -3'
miRNA:   3'- gCuaGUC-GCCgUGGUCCU-UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 114069 0.66 0.857252
Target:  5'- gCGGcUCAGCGGCGCC--GAGCUGGaGUUu -3'
miRNA:   3'- -GCU-AGUCGCCGUGGucCUUGGUC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.