Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23793 | 3' | -56.9 | NC_005261.1 | + | 24190 | 0.66 | 0.857252 |
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Target: 5'- -cGUCGGCgaGGCuCCAGGAucgucgGCgGGGUCc -3' miRNA: 3'- gcUAGUCG--CCGuGGUCCU------UGgUCCAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 114069 | 0.66 | 0.857252 |
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Target: 5'- gCGGcUCAGCGGCGCC--GAGCUGGaGUUu -3' miRNA: 3'- -GCU-AGUCGCCGUGGucCUUGGUC-CAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 36289 | 0.66 | 0.857252 |
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Target: 5'- gGcgCGGcCGGgACCGGGAaACUAGGcCa -3' miRNA: 3'- gCuaGUC-GCCgUGGUCCU-UGGUCCaG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 23535 | 0.66 | 0.857252 |
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Target: 5'- gCGAgcggCAGaGGCGgCAGGAGCCgucgcAGGUg -3' miRNA: 3'- -GCUa---GUCgCCGUgGUCCUUGG-----UCCAg -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 396 | 0.66 | 0.864907 |
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Target: 5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3' miRNA: 3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 57884 | 0.66 | 0.864907 |
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Target: 5'- -aGUCGGcCGGCACgGGGAcgGCCAccGcGUCg -3' miRNA: 3'- gcUAGUC-GCCGUGgUCCU--UGGU--C-CAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 84304 | 0.66 | 0.864907 |
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Target: 5'- ---cCGGCGGCGCCGaaGGCgUAGGUCg -3' miRNA: 3'- gcuaGUCGCCGUGGUccUUG-GUCCAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 99812 | 0.66 | 0.864907 |
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Target: 5'- gCGAaCAGC-GCGCCGuccGCCGGGUCg -3' miRNA: 3'- -GCUaGUCGcCGUGGUccuUGGUCCAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 138067 | 0.66 | 0.864907 |
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Target: 5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3' miRNA: 3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 14166 | 0.66 | 0.864907 |
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Target: 5'- gCGAaCGGCGcGCGuCUcGGGGCgCGGGUCa -3' miRNA: 3'- -GCUaGUCGC-CGU-GGuCCUUG-GUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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