miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 64 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5'
23793 3' -56.9 NC_005261.1 + 22653 0.66 0.828042
Target:  5'- aCGcgCuGGCGGCGCCuGGGcggcgcccgagugccGCCGGGg- -3'
miRNA:   3'- -GCuaG-UCGCCGUGGuCCU---------------UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 1718 0.66 0.824647
Target:  5'- uCGcgCGGCGGCA-CGGGcACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUgGUCCuUGGU-CCAg -5'
23793 3' -56.9 NC_005261.1 + 119654 0.66 0.824647
Target:  5'- cCGG-CGGCGcGCGCCuGGAGCuCuGGUUc -3'
miRNA:   3'- -GCUaGUCGC-CGUGGuCCUUG-GuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 14752 0.66 0.823794
Target:  5'- gCGAUCGGCGccGCGCCgcgacagGGGGGCCgccccgcgcAGGUg -3'
miRNA:   3'- -GCUAGUCGC--CGUGG-------UCCUUGG---------UCCAg -5'
23793 3' -56.9 NC_005261.1 + 83845 0.66 0.823794
Target:  5'- gCGggCcGCGGCcccgcugggcuggGCCGGGccggacGCCGGGUCa -3'
miRNA:   3'- -GCuaGuCGCCG-------------UGGUCCu-----UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 81346 0.67 0.816036
Target:  5'- -cGUCGGCGGgGCgGGGGcuugcggggggcGCCGGGcUCg -3'
miRNA:   3'- gcUAGUCGCCgUGgUCCU------------UGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 24558 0.67 0.816036
Target:  5'- ----gGGCGGCGCCAGGucCCAGc-- -3'
miRNA:   3'- gcuagUCGCCGUGGUCCuuGGUCcag -5'
23793 3' -56.9 NC_005261.1 + 97073 0.67 0.807257
Target:  5'- aCGAUCcGCgucggaGGCGCCGGcuGGGCCGGGg- -3'
miRNA:   3'- -GCUAGuCG------CCGUGGUC--CUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 26087 0.67 0.801912
Target:  5'- gCGG-CAGCGGCGgcagcagaggcagauCCAGcGGCCGGGUa -3'
miRNA:   3'- -GCUaGUCGCCGU---------------GGUCcUUGGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 69309 0.67 0.798318
Target:  5'- ---cCGGUGGCGgCGGGAGCgGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUgGUCCUUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 120925 0.67 0.798318
Target:  5'- uCGAUCcGCGaGCGCCGGGcGCgggaAGGUg -3'
miRNA:   3'- -GCUAGuCGC-CGUGGUCCuUGg---UCCAg -5'
23793 3' -56.9 NC_005261.1 + 125147 0.67 0.798318
Target:  5'- aGcAUCGcCGGCGCCGugauuGGGGCCGcGGUCa -3'
miRNA:   3'- gC-UAGUcGCCGUGGU-----CCUUGGU-CCAG- -5'
23793 3' -56.9 NC_005261.1 + 59614 0.67 0.798318
Target:  5'- gGcgCGGCGgaugaGCGCCAGG-ACCucgcGGUCg -3'
miRNA:   3'- gCuaGUCGC-----CGUGGUCCuUGGu---CCAG- -5'
23793 3' -56.9 NC_005261.1 + 33289 0.67 0.789227
Target:  5'- cCGGUCcGUgGGCACCccgucgcGGGACCAGGa- -3'
miRNA:   3'- -GCUAGuCG-CCGUGGu------CCUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 105276 0.67 0.789227
Target:  5'- gCGggCGGCaGCGCCGGcGAGCCcGGg- -3'
miRNA:   3'- -GCuaGUCGcCGUGGUC-CUUGGuCCag -5'
23793 3' -56.9 NC_005261.1 + 27492 0.67 0.789227
Target:  5'- ----gGGC-GCACCuGGAccGCCAGGUCu -3'
miRNA:   3'- gcuagUCGcCGUGGuCCU--UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 47705 0.67 0.789227
Target:  5'- cCGcGUCGGCGGCGUCGGGGGCCuccUCg -3'
miRNA:   3'- -GC-UAGUCGCCGUGGUCCUUGGuccAG- -5'
23793 3' -56.9 NC_005261.1 + 1058 0.67 0.779995
Target:  5'- -cGUUAGCGGCGCgGGGGGcuggccccgcuCCAGGg- -3'
miRNA:   3'- gcUAGUCGCCGUGgUCCUU-----------GGUCCag -5'
23793 3' -56.9 NC_005261.1 + 78623 0.68 0.761137
Target:  5'- uGGUCGG-GGCGCCAGGuccGCCGaGUUc -3'
miRNA:   3'- gCUAGUCgCCGUGGUCCu--UGGUcCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.