miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 121941 0.68 0.761137
Target:  5'- --uUCAGCaGCGCCAGcuuGAACCAGcUCg -3'
miRNA:   3'- gcuAGUCGcCGUGGUC---CUUGGUCcAG- -5'
23793 3' -56.9 NC_005261.1 + 14921 0.68 0.761137
Target:  5'- ---aCAGgGGCACCAGGAucgacGCCAGc-- -3'
miRNA:   3'- gcuaGUCgCCGUGGUCCU-----UGGUCcag -5'
23793 3' -56.9 NC_005261.1 + 93354 0.68 0.74182
Target:  5'- gCGcgCAGCGcGCGCCAGuGcGCCGGcGUg -3'
miRNA:   3'- -GCuaGUCGC-CGUGGUC-CuUGGUC-CAg -5'
23793 3' -56.9 NC_005261.1 + 82050 0.68 0.74182
Target:  5'- -cGUCAGCGcGgGCCAcGucGCCGGGUCg -3'
miRNA:   3'- gcUAGUCGC-CgUGGU-CcuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 92473 0.68 0.722116
Target:  5'- gGAUgAGCGGCACCGcgagcucgcGGAcggcgGCCAGcucGUCa -3'
miRNA:   3'- gCUAgUCGCCGUGGU---------CCU-----UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 107488 0.68 0.722116
Target:  5'- gCGAUCAGCGGCAgCAGcugcgccACgCAGGcCg -3'
miRNA:   3'- -GCUAGUCGCCGUgGUCcu-----UG-GUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 80886 0.68 0.722116
Target:  5'- gCGGgcuUCAGCGGCGCCucccAGGGGuCCucgucgcGGUCg -3'
miRNA:   3'- -GCU---AGUCGCCGUGG----UCCUU-GGu------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 30999 0.68 0.722116
Target:  5'- -aGUCGGcCGGgGCCAGGGGCCcGG-Cg -3'
miRNA:   3'- gcUAGUC-GCCgUGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 72690 0.68 0.722116
Target:  5'- gCGAacCGGC-GCGCCAGGuccGCCAGcGUCg -3'
miRNA:   3'- -GCUa-GUCGcCGUGGUCCu--UGGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 29580 0.69 0.712142
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 15177 0.69 0.702101
Target:  5'- gCGG-CGGCGGCGCCcgcGGGAaacGCCGccaucgcgcGGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGG---UCCU---UGGU---------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 105010 0.69 0.702101
Target:  5'- gCGGUCGG-GGCGCCAGGG--CGGuGUCc -3'
miRNA:   3'- -GCUAGUCgCCGUGGUCCUugGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 74495 0.69 0.699076
Target:  5'- gGAUCucggcgcucuucggGGCGGCGCCGGG-GCCAuGG-Cg -3'
miRNA:   3'- gCUAG--------------UCGCCGUGGUCCuUGGU-CCaG- -5'
23793 3' -56.9 NC_005261.1 + 15917 0.69 0.691999
Target:  5'- cCGcgCAGcCGGgGCCGGG-GCCGGGg- -3'
miRNA:   3'- -GCuaGUC-GCCgUGGUCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 130170 0.69 0.691999
Target:  5'- -cGUCAGCGGCGCCGGcAGCaGGGa- -3'
miRNA:   3'- gcUAGUCGCCGUGGUCcUUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 126942 0.69 0.681848
Target:  5'- gCGGcCAGgGGCGCCGGGcGCgGGGg- -3'
miRNA:   3'- -GCUaGUCgCCGUGGUCCuUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 15061 0.69 0.681848
Target:  5'- gGGUC-GCGGCGgggUCGGGggUCAGGcUCg -3'
miRNA:   3'- gCUAGuCGCCGU---GGUCCuuGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 92633 0.69 0.671655
Target:  5'- gCGAg-AGCGGgACCGGGA-CCGGGa- -3'
miRNA:   3'- -GCUagUCGCCgUGGUCCUuGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 72839 0.69 0.66143
Target:  5'- gCGGUCGGCcagGGCGCCAGcgcCCAGG-Cg -3'
miRNA:   3'- -GCUAGUCG---CCGUGGUCcuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 65670 0.69 0.66143
Target:  5'- gCGcgCAGCGcCGCCAGc-ACCGGGUCc -3'
miRNA:   3'- -GCuaGUCGCcGUGGUCcuUGGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.