miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 64 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5'
23793 3' -56.9 NC_005261.1 + 396 0.66 0.864907
Target:  5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 1058 0.67 0.779995
Target:  5'- -cGUUAGCGGCGCgGGGGGcuggccccgcuCCAGGg- -3'
miRNA:   3'- gcUAGUCGCCGUGgUCCUU-----------GGUCCag -5'
23793 3' -56.9 NC_005261.1 + 1718 0.66 0.824647
Target:  5'- uCGcgCGGCGGCA-CGGGcACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUgGUCCuUGGU-CCAg -5'
23793 3' -56.9 NC_005261.1 + 2458 0.74 0.390772
Target:  5'- gGGUCgaaGGCGaGCGCCGGGcGCCAGGg- -3'
miRNA:   3'- gCUAG---UCGC-CGUGGUCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 2653 0.66 0.841332
Target:  5'- gCGggCAGCGGCggcucccgccgcGCUGGGGACCcGG-Cg -3'
miRNA:   3'- -GCuaGUCGCCG------------UGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 4400 0.66 0.849391
Target:  5'- cCGggCGGCGGCggcgcgcuGCCGGG--CCAGGcCu -3'
miRNA:   3'- -GCuaGUCGCCG--------UGGUCCuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 13145 0.69 0.658358
Target:  5'- uCGGUgaCGGCGcGCACCAGGcgguccgaggugacGACCAGGc- -3'
miRNA:   3'- -GCUA--GUCGC-CGUGGUCC--------------UUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 14166 0.66 0.864907
Target:  5'- gCGAaCGGCGcGCGuCUcGGGGCgCGGGUCa -3'
miRNA:   3'- -GCUaGUCGC-CGU-GGuCCUUG-GUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 14752 0.66 0.823794
Target:  5'- gCGAUCGGCGccGCGCCgcgacagGGGGGCCgccccgcgcAGGUg -3'
miRNA:   3'- -GCUAGUCGC--CGUGG-------UCCUUGG---------UCCAg -5'
23793 3' -56.9 NC_005261.1 + 14921 0.68 0.761137
Target:  5'- ---aCAGgGGCACCAGGAucgacGCCAGc-- -3'
miRNA:   3'- gcuaGUCgCCGUGGUCCU-----UGGUCcag -5'
23793 3' -56.9 NC_005261.1 + 15025 0.66 0.841332
Target:  5'- -uGUCGGCgGGUGCCGGGGGCguagcgggggGGGUCg -3'
miRNA:   3'- gcUAGUCG-CCGUGGUCCUUGg---------UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 15061 0.69 0.681848
Target:  5'- gGGUC-GCGGCGgggUCGGGggUCAGGcUCg -3'
miRNA:   3'- gCUAGuCGCCGU---GGUCCuuGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 15177 0.69 0.702101
Target:  5'- gCGG-CGGCGGCGCCcgcGGGAaacGCCGccaucgcgcGGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGG---UCCU---UGGU---------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 15264 0.72 0.490199
Target:  5'- gCGAUCgccccGGCGGCGCCGccGGGGCgCGcGGUCg -3'
miRNA:   3'- -GCUAG-----UCGCCGUGGU--CCUUG-GU-CCAG- -5'
23793 3' -56.9 NC_005261.1 + 15917 0.69 0.691999
Target:  5'- cCGcgCAGcCGGgGCCGGG-GCCGGGg- -3'
miRNA:   3'- -GCuaGUC-GCCgUGGUCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 16242 0.66 0.841332
Target:  5'- gCGGUCGaCGuccGCGCCGGGGccGCCGGGg- -3'
miRNA:   3'- -GCUAGUcGC---CGUGGUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 20570 0.74 0.425423
Target:  5'- uGcgCAGCGGCGCCGGcGGCgCGGGUg -3'
miRNA:   3'- gCuaGUCGCCGUGGUCcUUG-GUCCAg -5'
23793 3' -56.9 NC_005261.1 + 22653 0.66 0.828042
Target:  5'- aCGcgCuGGCGGCGCCuGGGcggcgcccgagugccGCCGGGg- -3'
miRNA:   3'- -GCuaG-UCGCCGUGGuCCU---------------UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 23535 0.66 0.857252
Target:  5'- gCGAgcggCAGaGGCGgCAGGAGCCgucgcAGGUg -3'
miRNA:   3'- -GCUa---GUCgCCGUgGUCCUUGG-----UCCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.