miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 69309 0.67 0.798318
Target:  5'- ---cCGGUGGCGgCGGGAGCgGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUgGUCCUUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 69764 0.7 0.651181
Target:  5'- gCGGggGGCGGCGCCGGGGACUg---- -3'
miRNA:   3'- -GCUagUCGCCGUGGUCCUUGGuccag -5'
23793 3' -56.9 NC_005261.1 + 70339 0.71 0.549147
Target:  5'- aCGcGUCgAGCGG-GCCGGGGACCGGGa- -3'
miRNA:   3'- -GC-UAG-UCGCCgUGGUCCUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 72690 0.68 0.722116
Target:  5'- gCGAacCGGC-GCGCCAGGuccGCCAGcGUCg -3'
miRNA:   3'- -GCUa-GUCGcCGUGGUCCu--UGGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 72839 0.69 0.66143
Target:  5'- gCGGUCGGCcagGGCGCCAGcgcCCAGG-Cg -3'
miRNA:   3'- -GCUAGUCG---CCGUGGUCcuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 74495 0.69 0.699076
Target:  5'- gGAUCucggcgcucuucggGGCGGCGCCGGG-GCCAuGG-Cg -3'
miRNA:   3'- gCUAG--------------UCGCCGUGGUCCuUGGU-CCaG- -5'
23793 3' -56.9 NC_005261.1 + 75319 0.66 0.857252
Target:  5'- -cGUCGGCGGCGCgC-GGAGCCcuGUg -3'
miRNA:   3'- gcUAGUCGCCGUG-GuCCUUGGucCAg -5'
23793 3' -56.9 NC_005261.1 + 76238 0.66 0.857252
Target:  5'- aCGAgacGCGGCGCCu-GAGCCAGuUCa -3'
miRNA:   3'- -GCUaguCGCCGUGGucCUUGGUCcAG- -5'
23793 3' -56.9 NC_005261.1 + 78623 0.68 0.761137
Target:  5'- uGGUCGG-GGCGCCAGGuccGCCGaGUUc -3'
miRNA:   3'- gCUAGUCgCCGUGGUCCu--UGGUcCAG- -5'
23793 3' -56.9 NC_005261.1 + 79913 0.75 0.382402
Target:  5'- ---gCAGCaGGCACCAGGAcgugGCCAGG-Cg -3'
miRNA:   3'- gcuaGUCG-CCGUGGUCCU----UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 80886 0.68 0.722116
Target:  5'- gCGGgcuUCAGCGGCGCCucccAGGGGuCCucgucgcGGUCg -3'
miRNA:   3'- -GCU---AGUCGCCGUGG----UCCUU-GGu------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 81346 0.67 0.816036
Target:  5'- -cGUCGGCGGgGCgGGGGcuugcggggggcGCCGGGcUCg -3'
miRNA:   3'- gcUAGUCGCCgUGgUCCU------------UGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 82050 0.68 0.74182
Target:  5'- -cGUCAGCGcGgGCCAcGucGCCGGGUCg -3'
miRNA:   3'- gcUAGUCGC-CgUGGU-CcuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 83748 0.66 0.841332
Target:  5'- uCGAggUGGCGGCgcGCCAcG-GCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcCuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 83845 0.66 0.823794
Target:  5'- gCGggCcGCGGCcccgcugggcuggGCCGGGccggacGCCGGGUCa -3'
miRNA:   3'- -GCuaGuCGCCG-------------UGGUCCu-----UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 84304 0.66 0.864907
Target:  5'- ---cCGGCGGCGCCGaaGGCgUAGGUCg -3'
miRNA:   3'- gcuaGUCGCCGUGGUccUUG-GUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 88182 0.72 0.529212
Target:  5'- gCGAcgcCGGCGGCGCCGGcGAGgCGGGcCg -3'
miRNA:   3'- -GCUa--GUCGCCGUGGUC-CUUgGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 92473 0.68 0.722116
Target:  5'- gGAUgAGCGGCACCGcgagcucgcGGAcggcgGCCAGcucGUCa -3'
miRNA:   3'- gCUAgUCGCCGUGGU---------CCU-----UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 92633 0.69 0.671655
Target:  5'- gCGAg-AGCGGgACCGGGA-CCGGGa- -3'
miRNA:   3'- -GCUagUCGCCgUGGUCCUuGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 93354 0.68 0.74182
Target:  5'- gCGcgCAGCGcGCGCCAGuGcGCCGGcGUg -3'
miRNA:   3'- -GCuaGUCGC-CGUGGUC-CuUGGUC-CAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.