miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 93675 0.7 0.640917
Target:  5'- gCGggCGGCGGCGCCGGcGGggcGCCggcGGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGGUC-CU---UGG---UCCAg -5'
23793 3' -56.9 NC_005261.1 + 94058 0.76 0.325006
Target:  5'- ---cCAGCGGCGCCGGGAgcagaaccgccgccGCCGGGa- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCCU--------------UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 95736 0.72 0.53616
Target:  5'- gCGcUCAGCGGCGCCgccgccgccgccggGGGcGCCGGGa- -3'
miRNA:   3'- -GCuAGUCGCCGUGG--------------UCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 97073 0.67 0.807257
Target:  5'- aCGAUCcGCgucggaGGCGCCGGcuGGGCCGGGg- -3'
miRNA:   3'- -GCUAGuCG------CCGUGGUC--CUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 97457 0.75 0.350134
Target:  5'- --uUCGGCGGCGCCGGGAucGCCAaaaccGUCg -3'
miRNA:   3'- gcuAGUCGCCGUGGUCCU--UGGUc----CAG- -5'
23793 3' -56.9 NC_005261.1 + 97535 0.7 0.630646
Target:  5'- gCGAUCGGCGGCcCCGGcGGuGCCGGcccGUCc -3'
miRNA:   3'- -GCUAGUCGCCGuGGUC-CU-UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 99812 0.66 0.864907
Target:  5'- gCGAaCAGC-GCGCCGuccGCCGGGUCg -3'
miRNA:   3'- -GCUaGUCGcCGUGGUccuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 102275 0.71 0.579461
Target:  5'- cCGGUCGGCcugccGCGCCAGcGGCCgcGGGUCg -3'
miRNA:   3'- -GCUAGUCGc----CGUGGUCcUUGG--UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 103858 0.69 0.660406
Target:  5'- gCGAgccgCGGCGGCGgCGGGGcggcgccGCCGGG-Cg -3'
miRNA:   3'- -GCUa---GUCGCCGUgGUCCU-------UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 104527 0.73 0.47214
Target:  5'- gCGA-CGGCGGCcgccACCAGGcgcagcuuggcguccGCCAGGUCg -3'
miRNA:   3'- -GCUaGUCGCCG----UGGUCCu--------------UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 105010 0.69 0.702101
Target:  5'- gCGGUCGG-GGCGCCAGGG--CGGuGUCc -3'
miRNA:   3'- -GCUAGUCgCCGUGGUCCUugGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 105276 0.67 0.789227
Target:  5'- gCGggCGGCaGCGCCGGcGAGCCcGGg- -3'
miRNA:   3'- -GCuaGUCGcCGUGGUC-CUUGGuCCag -5'
23793 3' -56.9 NC_005261.1 + 107488 0.68 0.722116
Target:  5'- gCGAUCAGCGGCAgCAGcugcgccACgCAGGcCg -3'
miRNA:   3'- -GCUAGUCGCCGUgGUCcu-----UG-GUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 107566 0.7 0.650155
Target:  5'- aCGG-CAGCGGCGaagUAGGGcgcgaagGCCGGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUg--GUCCU-------UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 109068 0.72 0.528222
Target:  5'- ---cCAGCGGCGCCucGGcgaucaugccguuGGCCAGGUCc -3'
miRNA:   3'- gcuaGUCGCCGUGGu-CC-------------UUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 111090 0.72 0.509549
Target:  5'- uGGUguGgGGgGCCGGGGACUGGGUg -3'
miRNA:   3'- gCUAguCgCCgUGGUCCUUGGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 114069 0.66 0.857252
Target:  5'- gCGGcUCAGCGGCGCC--GAGCUGGaGUUu -3'
miRNA:   3'- -GCU-AGUCGCCGUGGucCUUGGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 117907 0.66 0.849391
Target:  5'- gGGUgAGCGGCugCgcGGGAACgaAGGcCg -3'
miRNA:   3'- gCUAgUCGCCGugG--UCCUUGg-UCCaG- -5'
23793 3' -56.9 NC_005261.1 + 119654 0.66 0.824647
Target:  5'- cCGG-CGGCGcGCGCCuGGAGCuCuGGUUc -3'
miRNA:   3'- -GCUaGUCGC-CGUGGuCCUUG-GuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 120925 0.67 0.798318
Target:  5'- uCGAUCcGCGaGCGCCGGGcGCgggaAGGUg -3'
miRNA:   3'- -GCUAGuCGC-CGUGGUCCuUGg---UCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.