Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23793 | 3' | -56.9 | NC_005261.1 | + | 121632 | 0.66 | 0.841332 |
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Target: 5'- cCGcUCGGCGGCcgccGCCGGcGAGCgCGGGc- -3' miRNA: 3'- -GCuAGUCGCCG----UGGUC-CUUG-GUCCag -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 121941 | 0.68 | 0.761137 |
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Target: 5'- --uUCAGCaGCGCCAGcuuGAACCAGcUCg -3' miRNA: 3'- gcuAGUCGcCGUGGUC---CUUGGUCcAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 125147 | 0.67 | 0.798318 |
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Target: 5'- aGcAUCGcCGGCGCCGugauuGGGGCCGcGGUCa -3' miRNA: 3'- gC-UAGUcGCCGUGGU-----CCUUGGU-CCAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 126942 | 0.69 | 0.681848 |
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Target: 5'- gCGGcCAGgGGCGCCGGGcGCgGGGg- -3' miRNA: 3'- -GCUaGUCgCCGUGGUCCuUGgUCCag -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 127641 | 0.76 | 0.298456 |
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Target: 5'- aCGG-CGGCGGCGCCGGGGggcGCgCGGGUUc -3' miRNA: 3'- -GCUaGUCGCCGUGGUCCU---UG-GUCCAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 127856 | 0.74 | 0.390772 |
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Target: 5'- gCGGUC-GCGGCGCCAGGGcacgaGCgGGaGUCg -3' miRNA: 3'- -GCUAGuCGCCGUGGUCCU-----UGgUC-CAG- -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 129654 | 0.7 | 0.610115 |
|
Target: 5'- gCGG-CGGCGGCGgCAGGGgcgggACCGGGg- -3' miRNA: 3'- -GCUaGUCGCCGUgGUCCU-----UGGUCCag -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 130170 | 0.69 | 0.691999 |
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Target: 5'- -cGUCAGCGGCGCCGGcAGCaGGGa- -3' miRNA: 3'- gcUAGUCGCCGUGGUCcUUGgUCCag -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 137747 | 0.66 | 0.833082 |
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Target: 5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3' miRNA: 3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5' |
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| 23793 | 3' | -56.9 | NC_005261.1 | + | 138067 | 0.66 | 0.864907 |
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Target: 5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3' miRNA: 3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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