miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 104527 0.73 0.47214
Target:  5'- gCGA-CGGCGGCcgccACCAGGcgcagcuuggcguccGCCAGGUCg -3'
miRNA:   3'- -GCUaGUCGCCG----UGGUCCu--------------UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 103858 0.69 0.660406
Target:  5'- gCGAgccgCGGCGGCGgCGGGGcggcgccGCCGGG-Cg -3'
miRNA:   3'- -GCUa---GUCGCCGUgGUCCU-------UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 102275 0.71 0.579461
Target:  5'- cCGGUCGGCcugccGCGCCAGcGGCCgcGGGUCg -3'
miRNA:   3'- -GCUAGUCGc----CGUGGUCcUUGG--UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 99812 0.66 0.864907
Target:  5'- gCGAaCAGC-GCGCCGuccGCCGGGUCg -3'
miRNA:   3'- -GCUaGUCGcCGUGGUccuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 97535 0.7 0.630646
Target:  5'- gCGAUCGGCGGCcCCGGcGGuGCCGGcccGUCc -3'
miRNA:   3'- -GCUAGUCGCCGuGGUC-CU-UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 97457 0.75 0.350134
Target:  5'- --uUCGGCGGCGCCGGGAucGCCAaaaccGUCg -3'
miRNA:   3'- gcuAGUCGCCGUGGUCCU--UGGUc----CAG- -5'
23793 3' -56.9 NC_005261.1 + 97073 0.67 0.807257
Target:  5'- aCGAUCcGCgucggaGGCGCCGGcuGGGCCGGGg- -3'
miRNA:   3'- -GCUAGuCG------CCGUGGUC--CUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 95736 0.72 0.53616
Target:  5'- gCGcUCAGCGGCGCCgccgccgccgccggGGGcGCCGGGa- -3'
miRNA:   3'- -GCuAGUCGCCGUGG--------------UCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 94058 0.76 0.325006
Target:  5'- ---cCAGCGGCGCCGGGAgcagaaccgccgccGCCGGGa- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCCU--------------UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 93675 0.7 0.640917
Target:  5'- gCGggCGGCGGCGCCGGcGGggcGCCggcGGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGGUC-CU---UGG---UCCAg -5'
23793 3' -56.9 NC_005261.1 + 93354 0.68 0.74182
Target:  5'- gCGcgCAGCGcGCGCCAGuGcGCCGGcGUg -3'
miRNA:   3'- -GCuaGUCGC-CGUGGUC-CuUGGUC-CAg -5'
23793 3' -56.9 NC_005261.1 + 92633 0.69 0.671655
Target:  5'- gCGAg-AGCGGgACCGGGA-CCGGGa- -3'
miRNA:   3'- -GCUagUCGCCgUGGUCCUuGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 92473 0.68 0.722116
Target:  5'- gGAUgAGCGGCACCGcgagcucgcGGAcggcgGCCAGcucGUCa -3'
miRNA:   3'- gCUAgUCGCCGUGGU---------CCU-----UGGUC---CAG- -5'
23793 3' -56.9 NC_005261.1 + 88182 0.72 0.529212
Target:  5'- gCGAcgcCGGCGGCGCCGGcGAGgCGGGcCg -3'
miRNA:   3'- -GCUa--GUCGCCGUGGUC-CUUgGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 84304 0.66 0.864907
Target:  5'- ---cCGGCGGCGCCGaaGGCgUAGGUCg -3'
miRNA:   3'- gcuaGUCGCCGUGGUccUUG-GUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 83845 0.66 0.823794
Target:  5'- gCGggCcGCGGCcccgcugggcuggGCCGGGccggacGCCGGGUCa -3'
miRNA:   3'- -GCuaGuCGCCG-------------UGGUCCu-----UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 83748 0.66 0.841332
Target:  5'- uCGAggUGGCGGCgcGCCAcG-GCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcCuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 82050 0.68 0.74182
Target:  5'- -cGUCAGCGcGgGCCAcGucGCCGGGUCg -3'
miRNA:   3'- gcUAGUCGC-CgUGGU-CcuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 81346 0.67 0.816036
Target:  5'- -cGUCGGCGGgGCgGGGGcuugcggggggcGCCGGGcUCg -3'
miRNA:   3'- gcUAGUCGCCgUGgUCCU------------UGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 80886 0.68 0.722116
Target:  5'- gCGGgcuUCAGCGGCGCCucccAGGGGuCCucgucgcGGUCg -3'
miRNA:   3'- -GCU---AGUCGCCGUGG----UCCUU-GGu------CCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.