miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 79913 0.75 0.382402
Target:  5'- ---gCAGCaGGCACCAGGAcgugGCCAGG-Cg -3'
miRNA:   3'- gcuaGUCG-CCGUGGUCCU----UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 78623 0.68 0.761137
Target:  5'- uGGUCGG-GGCGCCAGGuccGCCGaGUUc -3'
miRNA:   3'- gCUAGUCgCCGUGGUCCu--UGGUcCAG- -5'
23793 3' -56.9 NC_005261.1 + 76238 0.66 0.857252
Target:  5'- aCGAgacGCGGCGCCu-GAGCCAGuUCa -3'
miRNA:   3'- -GCUaguCGCCGUGGucCUUGGUCcAG- -5'
23793 3' -56.9 NC_005261.1 + 75319 0.66 0.857252
Target:  5'- -cGUCGGCGGCGCgC-GGAGCCcuGUg -3'
miRNA:   3'- gcUAGUCGCCGUG-GuCCUUGGucCAg -5'
23793 3' -56.9 NC_005261.1 + 74495 0.69 0.699076
Target:  5'- gGAUCucggcgcucuucggGGCGGCGCCGGG-GCCAuGG-Cg -3'
miRNA:   3'- gCUAG--------------UCGCCGUGGUCCuUGGU-CCaG- -5'
23793 3' -56.9 NC_005261.1 + 72839 0.69 0.66143
Target:  5'- gCGGUCGGCcagGGCGCCAGcgcCCAGG-Cg -3'
miRNA:   3'- -GCUAGUCG---CCGUGGUCcuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 72690 0.68 0.722116
Target:  5'- gCGAacCGGC-GCGCCAGGuccGCCAGcGUCg -3'
miRNA:   3'- -GCUa-GUCGcCGUGGUCCu--UGGUC-CAG- -5'
23793 3' -56.9 NC_005261.1 + 70339 0.71 0.549147
Target:  5'- aCGcGUCgAGCGG-GCCGGGGACCGGGa- -3'
miRNA:   3'- -GC-UAG-UCGCCgUGGUCCUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 69764 0.7 0.651181
Target:  5'- gCGGggGGCGGCGCCGGGGACUg---- -3'
miRNA:   3'- -GCUagUCGCCGUGGUCCUUGGuccag -5'
23793 3' -56.9 NC_005261.1 + 69309 0.67 0.798318
Target:  5'- ---cCGGUGGCGgCGGGAGCgGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUgGUCCUUGgUCCag -5'
23793 3' -56.9 NC_005261.1 + 65670 0.69 0.66143
Target:  5'- gCGcgCAGCGcCGCCAGc-ACCGGGUCc -3'
miRNA:   3'- -GCuaGUCGCcGUGGUCcuUGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 65326 0.71 0.55618
Target:  5'- cCGGgcaCAGCGGCACCGGGAuguugccguugaugACgCGGGg- -3'
miRNA:   3'- -GCUa--GUCGCCGUGGUCCU--------------UG-GUCCag -5'
23793 3' -56.9 NC_005261.1 + 64876 0.9 0.042722
Target:  5'- aGAUCAGCGGCGgCGGGAgcGCCGGGUCc -3'
miRNA:   3'- gCUAGUCGCCGUgGUCCU--UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 63362 0.7 0.630646
Target:  5'- ---aCGGUGGCGCggugCGGGuguGCCGGGUCg -3'
miRNA:   3'- gcuaGUCGCCGUG----GUCCu--UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 59614 0.67 0.798318
Target:  5'- gGcgCGGCGgaugaGCGCCAGG-ACCucgcGGUCg -3'
miRNA:   3'- gCuaGUCGC-----CGUGGUCCuUGGu---CCAG- -5'
23793 3' -56.9 NC_005261.1 + 59019 0.7 0.640917
Target:  5'- ---cCAGCGGCgccGCCAGGAA-CGGGUg -3'
miRNA:   3'- gcuaGUCGCCG---UGGUCCUUgGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 58074 0.75 0.350134
Target:  5'- gCGGaCGGCGGCGCCAGGGcCCGcGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCCUuGGUcCAG- -5'
23793 3' -56.9 NC_005261.1 + 57884 0.66 0.864907
Target:  5'- -aGUCGGcCGGCACgGGGAcgGCCAccGcGUCg -3'
miRNA:   3'- gcUAGUC-GCCGUGgUCCU--UGGU--C-CAG- -5'
23793 3' -56.9 NC_005261.1 + 47705 0.67 0.789227
Target:  5'- cCGcGUCGGCGGCGUCGGGGGCCuccUCg -3'
miRNA:   3'- -GC-UAGUCGCCGUGGUCCUUGGuccAG- -5'
23793 3' -56.9 NC_005261.1 + 44611 0.7 0.640917
Target:  5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3'
miRNA:   3'- gCUAGuCGcCGUGGUCC----UugGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.