miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 36289 0.66 0.857252
Target:  5'- gGcgCGGcCGGgACCGGGAaACUAGGcCa -3'
miRNA:   3'- gCuaGUC-GCCgUGGUCCU-UGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 33743 0.71 0.559203
Target:  5'- --cUCGcGCGGCGCCGGG-GCCGGGcCc -3'
miRNA:   3'- gcuAGU-CGCCGUGGUCCuUGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 33516 0.72 0.499833
Target:  5'- gCGG-CGGCGGCACCgcuggccccGGGAgcACCAGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUGG---------UCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 33289 0.67 0.789227
Target:  5'- cCGGUCcGUgGGCACCccgucgcGGGACCAGGa- -3'
miRNA:   3'- -GCUAGuCG-CCGUGGu------CCUUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 30999 0.68 0.722116
Target:  5'- -aGUCGGcCGGgGCCAGGGGCCcGG-Cg -3'
miRNA:   3'- gcUAGUC-GCCgUGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 29580 0.69 0.712142
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 27492 0.67 0.789227
Target:  5'- ----gGGC-GCACCuGGAccGCCAGGUCu -3'
miRNA:   3'- gcuagUCGcCGUGGuCCU--UGGUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 26087 0.67 0.801912
Target:  5'- gCGG-CAGCGGCGgcagcagaggcagauCCAGcGGCCGGGUa -3'
miRNA:   3'- -GCUaGUCGCCGU---------------GGUCcUUGGUCCAg -5'
23793 3' -56.9 NC_005261.1 + 24558 0.67 0.816036
Target:  5'- ----gGGCGGCGCCAGGucCCAGc-- -3'
miRNA:   3'- gcuagUCGCCGUGGUCCuuGGUCcag -5'
23793 3' -56.9 NC_005261.1 + 24190 0.66 0.857252
Target:  5'- -cGUCGGCgaGGCuCCAGGAucgucgGCgGGGUCc -3'
miRNA:   3'- gcUAGUCG--CCGuGGUCCU------UGgUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 23535 0.66 0.857252
Target:  5'- gCGAgcggCAGaGGCGgCAGGAGCCgucgcAGGUg -3'
miRNA:   3'- -GCUa---GUCgCCGUgGUCCUUGG-----UCCAg -5'
23793 3' -56.9 NC_005261.1 + 22653 0.66 0.828042
Target:  5'- aCGcgCuGGCGGCGCCuGGGcggcgcccgagugccGCCGGGg- -3'
miRNA:   3'- -GCuaG-UCGCCGUGGuCCU---------------UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 20570 0.74 0.425423
Target:  5'- uGcgCAGCGGCGCCGGcGGCgCGGGUg -3'
miRNA:   3'- gCuaGUCGCCGUGGUCcUUG-GUCCAg -5'
23793 3' -56.9 NC_005261.1 + 16242 0.66 0.841332
Target:  5'- gCGGUCGaCGuccGCGCCGGGGccGCCGGGg- -3'
miRNA:   3'- -GCUAGUcGC---CGUGGUCCU--UGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 15917 0.69 0.691999
Target:  5'- cCGcgCAGcCGGgGCCGGG-GCCGGGg- -3'
miRNA:   3'- -GCuaGUC-GCCgUGGUCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 15264 0.72 0.490199
Target:  5'- gCGAUCgccccGGCGGCGCCGccGGGGCgCGcGGUCg -3'
miRNA:   3'- -GCUAG-----UCGCCGUGGU--CCUUG-GU-CCAG- -5'
23793 3' -56.9 NC_005261.1 + 15177 0.69 0.702101
Target:  5'- gCGG-CGGCGGCGCCcgcGGGAaacGCCGccaucgcgcGGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGG---UCCU---UGGU---------CCAG- -5'
23793 3' -56.9 NC_005261.1 + 15061 0.69 0.681848
Target:  5'- gGGUC-GCGGCGgggUCGGGggUCAGGcUCg -3'
miRNA:   3'- gCUAGuCGCCGU---GGUCCuuGGUCC-AG- -5'
23793 3' -56.9 NC_005261.1 + 15025 0.66 0.841332
Target:  5'- -uGUCGGCgGGUGCCGGGGGCguagcgggggGGGUCg -3'
miRNA:   3'- gcUAGUCG-CCGUGGUCCUUGg---------UCCAG- -5'
23793 3' -56.9 NC_005261.1 + 14921 0.68 0.761137
Target:  5'- ---aCAGgGGCACCAGGAucgacGCCAGc-- -3'
miRNA:   3'- gcuaGUCgCCGUGGUCCU-----UGGUCcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.