miRNA display CGI


Results 81 - 90 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 3' -56.9 NC_005261.1 + 14752 0.66 0.823794
Target:  5'- gCGAUCGGCGccGCGCCgcgacagGGGGGCCgccccgcgcAGGUg -3'
miRNA:   3'- -GCUAGUCGC--CGUGG-------UCCUUGG---------UCCAg -5'
23793 3' -56.9 NC_005261.1 + 14166 0.66 0.864907
Target:  5'- gCGAaCGGCGcGCGuCUcGGGGCgCGGGUCa -3'
miRNA:   3'- -GCUaGUCGC-CGU-GGuCCUUG-GUCCAG- -5'
23793 3' -56.9 NC_005261.1 + 13145 0.69 0.658358
Target:  5'- uCGGUgaCGGCGcGCACCAGGcgguccgaggugacGACCAGGc- -3'
miRNA:   3'- -GCUA--GUCGC-CGUGGUCC--------------UUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 4400 0.66 0.849391
Target:  5'- cCGggCGGCGGCggcgcgcuGCCGGG--CCAGGcCu -3'
miRNA:   3'- -GCuaGUCGCCG--------UGGUCCuuGGUCCaG- -5'
23793 3' -56.9 NC_005261.1 + 2653 0.66 0.841332
Target:  5'- gCGggCAGCGGCggcucccgccgcGCUGGGGACCcGG-Cg -3'
miRNA:   3'- -GCuaGUCGCCG------------UGGUCCUUGGuCCaG- -5'
23793 3' -56.9 NC_005261.1 + 2458 0.74 0.390772
Target:  5'- gGGUCgaaGGCGaGCGCCGGGcGCCAGGg- -3'
miRNA:   3'- gCUAG---UCGC-CGUGGUCCuUGGUCCag -5'
23793 3' -56.9 NC_005261.1 + 1718 0.66 0.824647
Target:  5'- uCGcgCGGCGGCA-CGGGcACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUgGUCCuUGGU-CCAg -5'
23793 3' -56.9 NC_005261.1 + 1058 0.67 0.779995
Target:  5'- -cGUUAGCGGCGCgGGGGGcuggccccgcuCCAGGg- -3'
miRNA:   3'- gcUAGUCGCCGUGgUCCUU-----------GGUCCag -5'
23793 3' -56.9 NC_005261.1 + 396 0.66 0.864907
Target:  5'- gCGG-CGGCGGCGgCAGcGGuCCuGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUgGUC-CUuGGuCCAG- -5'
23793 3' -56.9 NC_005261.1 + 64 0.66 0.833082
Target:  5'- cCGAaaUCGGC-GCGCgCGGGGGCgGGGUg -3'
miRNA:   3'- -GCU--AGUCGcCGUG-GUCCUUGgUCCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.