Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23793 | 3' | -56.9 | NC_005261.1 | + | 79913 | 0.75 | 0.382402 |
Target: 5'- ---gCAGCaGGCACCAGGAcgugGCCAGG-Cg -3' miRNA: 3'- gcuaGUCG-CCGUGGUCCU----UGGUCCaG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 58074 | 0.75 | 0.350134 |
Target: 5'- gCGGaCGGCGGCGCCAGGGcCCGcGUCc -3' miRNA: 3'- -GCUaGUCGCCGUGGUCCUuGGUcCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 97457 | 0.75 | 0.350134 |
Target: 5'- --uUCGGCGGCGCCGGGAucGCCAaaaccGUCg -3' miRNA: 3'- gcuAGUCGCCGUGGUCCU--UGGUc----CAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 94058 | 0.76 | 0.325006 |
Target: 5'- ---cCAGCGGCGCCGGGAgcagaaccgccgccGCCGGGa- -3' miRNA: 3'- gcuaGUCGCCGUGGUCCU--------------UGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 127641 | 0.76 | 0.298456 |
Target: 5'- aCGG-CGGCGGCGCCGGGGggcGCgCGGGUUc -3' miRNA: 3'- -GCUaGUCGCCGUGGUCCU---UG-GUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 88182 | 0.72 | 0.529212 |
Target: 5'- gCGAcgcCGGCGGCGCCGGcGAGgCGGGcCg -3' miRNA: 3'- -GCUa--GUCGCCGUGGUC-CUUgGUCCaG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 95736 | 0.72 | 0.53616 |
Target: 5'- gCGcUCAGCGGCGCCgccgccgccgccggGGGcGCCGGGa- -3' miRNA: 3'- -GCuAGUCGCCGUGG--------------UCCuUGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 13145 | 0.69 | 0.658358 |
Target: 5'- uCGGUgaCGGCGcGCACCAGGcgguccgaggugacGACCAGGc- -3' miRNA: 3'- -GCUA--GUCGC-CGUGGUCC--------------UUGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 69764 | 0.7 | 0.651181 |
Target: 5'- gCGGggGGCGGCGCCGGGGACUg---- -3' miRNA: 3'- -GCUagUCGCCGUGGUCCUUGGuccag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 107566 | 0.7 | 0.650155 |
Target: 5'- aCGG-CAGCGGCGaagUAGGGcgcgaagGCCGGGUCc -3' miRNA: 3'- -GCUaGUCGCCGUg--GUCCU-------UGGUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 93675 | 0.7 | 0.640917 |
Target: 5'- gCGggCGGCGGCGCCGGcGGggcGCCggcGGGUg -3' miRNA: 3'- -GCuaGUCGCCGUGGUC-CU---UGG---UCCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 59019 | 0.7 | 0.640917 |
Target: 5'- ---cCAGCGGCgccGCCAGGAA-CGGGUg -3' miRNA: 3'- gcuaGUCGCCG---UGGUCCUUgGUCCAg -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 44611 | 0.7 | 0.640917 |
Target: 5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3' miRNA: 3'- gCUAGuCGcCGUGGUCC----UugGUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 63362 | 0.7 | 0.630646 |
Target: 5'- ---aCGGUGGCGCggugCGGGuguGCCGGGUCg -3' miRNA: 3'- gcuaGUCGCCGUG----GUCCu--UGGUCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 97535 | 0.7 | 0.630646 |
Target: 5'- gCGAUCGGCGGCcCCGGcGGuGCCGGcccGUCc -3' miRNA: 3'- -GCUAGUCGCCGuGGUC-CU-UGGUC---CAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 129654 | 0.7 | 0.610115 |
Target: 5'- gCGG-CGGCGGCGgCAGGGgcgggACCGGGg- -3' miRNA: 3'- -GCUaGUCGCCGUgGUCCU-----UGGUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 102275 | 0.71 | 0.579461 |
Target: 5'- cCGGUCGGCcugccGCGCCAGcGGCCgcGGGUCg -3' miRNA: 3'- -GCUAGUCGc----CGUGGUCcUUGG--UCCAG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 33743 | 0.71 | 0.559203 |
Target: 5'- --cUCGcGCGGCGCCGGG-GCCGGGcCc -3' miRNA: 3'- gcuAGU-CGCCGUGGUCCuUGGUCCaG- -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 65326 | 0.71 | 0.55618 |
Target: 5'- cCGGgcaCAGCGGCACCGGGAuguugccguugaugACgCGGGg- -3' miRNA: 3'- -GCUa--GUCGCCGUGGUCCU--------------UG-GUCCag -5' |
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23793 | 3' | -56.9 | NC_005261.1 | + | 70339 | 0.71 | 0.549147 |
Target: 5'- aCGcGUCgAGCGG-GCCGGGGACCGGGa- -3' miRNA: 3'- -GC-UAG-UCGCCgUGGUCCUUGGUCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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