miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 65666 0.66 0.803621
Target:  5'- gCCGgCGCGcaGCGCCGccAGCACCG-GGu -3'
miRNA:   3'- -GGCgGCGC--CGUGGUccUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 38489 0.66 0.803621
Target:  5'- gCCGCgGCGGCGUCGacuGGAGCGUCGUa- -3'
miRNA:   3'- -GGCGgCGCCGUGGU---CCUUGUGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 137794 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 109055 0.66 0.803621
Target:  5'- gCCGCCagguagcccaGCGGCGCCucGGcGAucAUGCCGuUGGc -3'
miRNA:   3'- -GGCGG----------CGCCGUGG--UC-CU--UGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 129365 0.66 0.803621
Target:  5'- uCCGCgcgcgggucgCGCGGCuuCGGGucCACCG-GGc -3'
miRNA:   3'- -GGCG----------GCGCCGugGUCCuuGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 116371 0.66 0.803621
Target:  5'- gCCGCCGCGcGCaauGCCGaucGGGGgGCCGc-- -3'
miRNA:   3'- -GGCGGCGC-CG---UGGU---CCUUgUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 59606 0.66 0.803621
Target:  5'- aCCuCCGCGGCGCgGcGGAugaGCGCCa-GGa -3'
miRNA:   3'- -GGcGGCGCCGUGgU-CCU---UGUGGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 45624 0.66 0.803621
Target:  5'- gCGgCGCGGCGCggCGGGcccGCGCCGg-- -3'
miRNA:   3'- gGCgGCGCCGUG--GUCCu--UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 50991 0.66 0.803621
Target:  5'- gCCGaCgGCGGCGCguGG-GCGCgGcGGg -3'
miRNA:   3'- -GGC-GgCGCCGUGguCCuUGUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 111 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 47849 0.66 0.802761
Target:  5'- aCGUCGCGGCguggccgagcguaGCCAGcGGCAgCGUccGGg -3'
miRNA:   3'- gGCGGCGCCG-------------UGGUCcUUGUgGCA--CC- -5'
23793 5' -59.5 NC_005261.1 + 59491 0.66 0.801037
Target:  5'- -nGCCGCcGCGCCAGcGGcggcggucgcacgcGCGCCcUGGa -3'
miRNA:   3'- ggCGGCGcCGUGGUC-CU--------------UGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 33469 0.66 0.794959
Target:  5'- gCCGCCGCcGCAgCCGGGccCGCuCGcGGn -3'
miRNA:   3'- -GGCGGCGcCGU-GGUCCuuGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 109558 0.66 0.794959
Target:  5'- aCCGCCGCGGC-CCcccu-CGCCGcUGc -3'
miRNA:   3'- -GGCGGCGCCGuGGuccuuGUGGC-ACc -5'
23793 5' -59.5 NC_005261.1 + 42040 0.66 0.794959
Target:  5'- cCCGUCGCGGUACU----GCGCCGa-- -3'
miRNA:   3'- -GGCGGCGCCGUGGuccuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 126056 0.66 0.794959
Target:  5'- cCCGCUcCGGCGCCAGccgccCGCCGg-- -3'
miRNA:   3'- -GGCGGcGCCGUGGUCcuu--GUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 120647 0.66 0.794959
Target:  5'- gUGCCuGCGGCGCaaggcgCGGGcGCGCCuGUGa -3'
miRNA:   3'- gGCGG-CGCCGUG------GUCCuUGUGG-CACc -5'
23793 5' -59.5 NC_005261.1 + 62824 0.66 0.794959
Target:  5'- gCCGCgCGgGGCACCGgcGGGGgACUGg-- -3'
miRNA:   3'- -GGCG-GCgCCGUGGU--CCUUgUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 97492 0.66 0.794959
Target:  5'- -gGCCcuugGgGGCGCCGGGGcCGCCGg-- -3'
miRNA:   3'- ggCGG----CgCCGUGGUCCUuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 93267 0.66 0.794959
Target:  5'- gCGCCaGCGcGCGCCuccAACACCGgcaGGa -3'
miRNA:   3'- gGCGG-CGC-CGUGGuccUUGUGGCa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.