miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 4415 0.66 0.759018
Target:  5'- gCGCUGCcGgGCCAGGccuCGCCGgagGGc -3'
miRNA:   3'- gGCGGCGcCgUGGUCCuu-GUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 98296 0.66 0.759018
Target:  5'- gCGuCCGCGGCcUCGGGGgcggGCGCCGc-- -3'
miRNA:   3'- gGC-GGCGCCGuGGUCCU----UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 68664 0.66 0.759018
Target:  5'- gCCGcCCGCGcCGCCGGcGucCGCCGcgUGGg -3'
miRNA:   3'- -GGC-GGCGCcGUGGUC-CuuGUGGC--ACC- -5'
23793 5' -59.5 NC_005261.1 + 60349 0.66 0.759018
Target:  5'- gCGCCGCGGCcgcgcGCCAGGcAGUGCU-UGGu -3'
miRNA:   3'- gGCGGCGCCG-----UGGUCC-UUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 119877 0.66 0.759018
Target:  5'- aCCGCCGCaGC-CgAGGGcguguACACC-UGGc -3'
miRNA:   3'- -GGCGGCGcCGuGgUCCU-----UGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 132896 0.66 0.759018
Target:  5'- -aGCCG-GGCGCCGcGGGcgGCGCCGa-- -3'
miRNA:   3'- ggCGGCgCCGUGGU-CCU--UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 23473 0.66 0.759018
Target:  5'- cCCGCgGCGGCgaguGCgCGGGccCGCC-UGGg -3'
miRNA:   3'- -GGCGgCGCCG----UG-GUCCuuGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 107365 0.66 0.759018
Target:  5'- gUCGUCGUgGGCGCCGGG-GCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGUGGUCCuUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 7900 0.66 0.759018
Target:  5'- uCCGgCGCGGCGCCAccaGAugGCGCC-UGa -3'
miRNA:   3'- -GGCgGCGCCGUGGUc--CU--UGUGGcACc -5'
23793 5' -59.5 NC_005261.1 + 137794 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 56829 0.66 0.759018
Target:  5'- gUGCCGCGGCGgCAcGGcAAgACC-UGGu -3'
miRNA:   3'- gGCGGCGCCGUgGU-CC-UUgUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 52973 0.66 0.759018
Target:  5'- gCCGgUGCGGCGCCggcaggcgGGGGcgGCGCCcaGGc -3'
miRNA:   3'- -GGCgGCGCCGUGG--------UCCU--UGUGGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 97695 0.66 0.759018
Target:  5'- gCUGCCGgGGCGgUGGGGAgACgGcGGg -3'
miRNA:   3'- -GGCGGCgCCGUgGUCCUUgUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 82804 0.66 0.768181
Target:  5'- uCCGCCGCGGCcACCuGcAGC-CgGUGc -3'
miRNA:   3'- -GGCGGCGCCG-UGGuCcUUGuGgCACc -5'
23793 5' -59.5 NC_005261.1 + 34085 0.66 0.759018
Target:  5'- uCCGCCGCuGGCuggAGGGGCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGuggUCCUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 74413 0.66 0.768181
Target:  5'- uCgGCCGCGGg--CGGGAGgGCCGaGGa -3'
miRNA:   3'- -GgCGGCGCCgugGUCCUUgUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 135028 0.66 0.759018
Target:  5'- gCgGCCGCGGCgGCgAGGccGACGCCuGcGGc -3'
miRNA:   3'- -GgCGGCGCCG-UGgUCC--UUGUGG-CaCC- -5'
23793 5' -59.5 NC_005261.1 + 113584 0.66 0.759018
Target:  5'- gCCGCCGCGcugggcgaccucGCGcCCGGGcAC-CCGcUGGc -3'
miRNA:   3'- -GGCGGCGC------------CGU-GGUCCuUGuGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 14985 0.66 0.768181
Target:  5'- gCgGCCGCGccggccGCGCCcGGAGCGCgGgaGGa -3'
miRNA:   3'- -GgCGGCGC------CGUGGuCCUUGUGgCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 125365 0.66 0.759018
Target:  5'- uCCGCCG-GGCAg-AGGGGCGCUGgaacGGg -3'
miRNA:   3'- -GGCGGCgCCGUggUCCUUGUGGCa---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.