miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 113584 0.66 0.759018
Target:  5'- gCCGCCGCGcugggcgaccucGCGcCCGGGcAC-CCGcUGGc -3'
miRNA:   3'- -GGCGGCGC------------CGU-GGUCCuUGuGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 52973 0.66 0.759018
Target:  5'- gCCGgUGCGGCGCCggcaggcgGGGGcgGCGCCcaGGc -3'
miRNA:   3'- -GGCgGCGCCGUGG--------UCCU--UGUGGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 29114 0.66 0.768181
Target:  5'- aCGCCGaggggagcccUGGCGCCgGGGGGCGCCccgccGGa -3'
miRNA:   3'- gGCGGC----------GCCGUGG-UCCUUGUGGca---CC- -5'
23793 5' -59.5 NC_005261.1 + 78196 0.66 0.777231
Target:  5'- gCCaCUGUGGaCGCCA---GCGCCGUGGc -3'
miRNA:   3'- -GGcGGCGCC-GUGGUccuUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 83613 0.66 0.771815
Target:  5'- uCCGCCGCGGCgugguccagcGCgAGGuccagcgcguacgucAGCGgCGUGa -3'
miRNA:   3'- -GGCGGCGCCG----------UGgUCC---------------UUGUgGCACc -5'
23793 5' -59.5 NC_005261.1 + 23473 0.66 0.759018
Target:  5'- cCCGCgGCGGCgaguGCgCGGGccCGCC-UGGg -3'
miRNA:   3'- -GGCGgCGCCG----UG-GUCCuuGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 56128 0.66 0.777231
Target:  5'- gCGCCGCaGgGCgGGGGGCgcggGCCGaGGg -3'
miRNA:   3'- gGCGGCGcCgUGgUCCUUG----UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 118164 0.66 0.777231
Target:  5'- gCCGUCGCGGCG--GGGcuUGCCGUcuGGg -3'
miRNA:   3'- -GGCGGCGCCGUggUCCuuGUGGCA--CC- -5'
23793 5' -59.5 NC_005261.1 + 32007 0.66 0.777231
Target:  5'- gCCGCCGCGcgaGUACCGGcAGCG-CGUGc -3'
miRNA:   3'- -GGCGGCGC---CGUGGUCcUUGUgGCACc -5'
23793 5' -59.5 NC_005261.1 + 82804 0.66 0.768181
Target:  5'- uCCGCCGCGGCcACCuGcAGC-CgGUGc -3'
miRNA:   3'- -GGCGGCGCCG-UGGuCcUUGuGgCACc -5'
23793 5' -59.5 NC_005261.1 + 74413 0.66 0.768181
Target:  5'- uCgGCCGCGGg--CGGGAGgGCCGaGGa -3'
miRNA:   3'- -GgCGGCGCCgugGUCCUUgUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 107365 0.66 0.759018
Target:  5'- gUCGUCGUgGGCGCCGGG-GCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGUGGUCCuUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 67965 0.66 0.777231
Target:  5'- gCCGCCGCGGCGau-GGAGuucgcuUACCGc-- -3'
miRNA:   3'- -GGCGGCGCCGUgguCCUU------GUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 60349 0.66 0.759018
Target:  5'- gCGCCGCGGCcgcgcGCCAGGcAGUGCU-UGGu -3'
miRNA:   3'- gGCGGCGCCG-----UGGUCC-UUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 32160 0.66 0.768181
Target:  5'- gCCGCUGCGGCcgguguaccugGCCugcGGGcGGCGCgCGcUGGa -3'
miRNA:   3'- -GGCGGCGCCG-----------UGG---UCC-UUGUG-GC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 137794 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 68664 0.66 0.759018
Target:  5'- gCCGcCCGCGcCGCCGGcGucCGCCGcgUGGg -3'
miRNA:   3'- -GGC-GGCGCcGUGGUC-CuuGUGGC--ACC- -5'
23793 5' -59.5 NC_005261.1 + 132360 0.66 0.768181
Target:  5'- uCCGCCGCGGCGCgCucgccGCGCuCGcGGc -3'
miRNA:   3'- -GGCGGCGCCGUG-Guccu-UGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 104676 0.66 0.774528
Target:  5'- gUGCUGCGGCagcGCCuGGGcCACCGccccgaagagcggcUGGa -3'
miRNA:   3'- gGCGGCGCCG---UGGuCCUuGUGGC--------------ACC- -5'
23793 5' -59.5 NC_005261.1 + 31302 0.66 0.768181
Target:  5'- cCCGCCGCcGCGC--GGGGC-CCGcGGg -3'
miRNA:   3'- -GGCGGCGcCGUGguCCUUGuGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.