miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 100505 0.66 0.768181
Target:  5'- gUGCCGuCGGCGuCCAGGua-GCCGcgcGGc -3'
miRNA:   3'- gGCGGC-GCCGU-GGUCCuugUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 125791 0.66 0.786159
Target:  5'- gCCGCUGCgaacggGGCuuggGCCGGGGcCGCCGcgagcgGGg -3'
miRNA:   3'- -GGCGGCG------CCG----UGGUCCUuGUGGCa-----CC- -5'
23793 5' -59.5 NC_005261.1 + 123230 0.66 0.771815
Target:  5'- gCCGCCuaGCGGCcgcCCAGGcGCGggccccgcccaucgcCCGUGa -3'
miRNA:   3'- -GGCGG--CGCCGu--GGUCCuUGU---------------GGCACc -5'
23793 5' -59.5 NC_005261.1 + 4415 0.66 0.759018
Target:  5'- gCGCUGCcGgGCCAGGccuCGCCGgagGGc -3'
miRNA:   3'- gGCGGCGcCgUGGUCCuu-GUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 93768 0.66 0.771815
Target:  5'- gCGCgCGCGGCGucgcagcaggugcccCCGGGAcgccGCGCCGc-- -3'
miRNA:   3'- gGCG-GCGCCGU---------------GGUCCU----UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 83613 0.66 0.771815
Target:  5'- uCCGCCGCGGCgugguccagcGCgAGGuccagcgcguacgucAGCGgCGUGa -3'
miRNA:   3'- -GGCGGCGCCG----------UGgUCC---------------UUGUgGCACc -5'
23793 5' -59.5 NC_005261.1 + 132360 0.66 0.768181
Target:  5'- uCCGCCGCGGCGCgCucgccGCGCuCGcGGc -3'
miRNA:   3'- -GGCGGCGCCGUG-Guccu-UGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 32007 0.66 0.777231
Target:  5'- gCCGCCGCGcgaGUACCGGcAGCG-CGUGc -3'
miRNA:   3'- -GGCGGCGC---CGUGGUCcUUGUgGCACc -5'
23793 5' -59.5 NC_005261.1 + 67965 0.66 0.777231
Target:  5'- gCCGCCGCGGCGau-GGAGuucgcuUACCGc-- -3'
miRNA:   3'- -GGCGGCGCCGUgguCCUU------GUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 34085 0.66 0.759018
Target:  5'- uCCGCCGCuGGCuggAGGGGCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGuggUCCUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 132896 0.66 0.759018
Target:  5'- -aGCCG-GGCGCCGcGGGcgGCGCCGa-- -3'
miRNA:   3'- ggCGGCgCCGUGGU-CCU--UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 78846 0.66 0.786159
Target:  5'- aCGCCgGCGGCGCCcgccgccGGAGCGCg---- -3'
miRNA:   3'- gGCGG-CGCCGUGGu------CCUUGUGgcacc -5'
23793 5' -59.5 NC_005261.1 + 44931 0.66 0.786159
Target:  5'- gCCGCCGaggagaguuCGGCGCUGGaGAGCcuGCUGcGGg -3'
miRNA:   3'- -GGCGGC---------GCCGUGGUC-CUUG--UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 56128 0.66 0.777231
Target:  5'- gCGCCGCaGgGCgGGGGGCgcggGCCGaGGg -3'
miRNA:   3'- gGCGGCGcCgUGgUCCUUG----UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 60349 0.66 0.759018
Target:  5'- gCGCCGCGGCcgcgcGCCAGGcAGUGCU-UGGu -3'
miRNA:   3'- gGCGGCGCCG-----UGGUCC-UUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 107365 0.66 0.759018
Target:  5'- gUCGUCGUgGGCGCCGGG-GCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGUGGUCCuUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 74413 0.66 0.768181
Target:  5'- uCgGCCGCGGg--CGGGAGgGCCGaGGa -3'
miRNA:   3'- -GgCGGCGCCgugGUCCUUgUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 20498 0.66 0.786159
Target:  5'- gCGCUGacagcgGGCcgGCUAGGGACGCCGg-- -3'
miRNA:   3'- gGCGGCg-----CCG--UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 127283 0.66 0.776331
Target:  5'- cCCGCCGCGGgggcagcccucccCGCCGGcug-GCgGUGGg -3'
miRNA:   3'- -GGCGGCGCC-------------GUGGUCcuugUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 104676 0.66 0.774528
Target:  5'- gUGCUGCGGCagcGCCuGGGcCACCGccccgaagagcggcUGGa -3'
miRNA:   3'- gGCGGCGCCG---UGGuCCUuGUGGC--------------ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.