miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 56128 0.66 0.777231
Target:  5'- gCGCCGCaGgGCgGGGGGCgcggGCCGaGGg -3'
miRNA:   3'- gGCGGCGcCgUGgUCCUUG----UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 120647 0.66 0.794959
Target:  5'- gUGCCuGCGGCGCaaggcgCGGGcGCGCCuGUGa -3'
miRNA:   3'- gGCGG-CGCCGUG------GUCCuUGUGG-CACc -5'
23793 5' -59.5 NC_005261.1 + 57383 0.66 0.777231
Target:  5'- cCCGCCaGCaGCuCgGGGAGCGcgcCCGUGa -3'
miRNA:   3'- -GGCGG-CGcCGuGgUCCUUGU---GGCACc -5'
23793 5' -59.5 NC_005261.1 + 104676 0.66 0.774528
Target:  5'- gUGCUGCGGCagcGCCuGGGcCACCGccccgaagagcggcUGGa -3'
miRNA:   3'- gGCGGCGCCG---UGGuCCUuGUGGC--------------ACC- -5'
23793 5' -59.5 NC_005261.1 + 33469 0.66 0.794959
Target:  5'- gCCGCCGCcGCAgCCGGGccCGCuCGcGGn -3'
miRNA:   3'- -GGCGGCGcCGU-GGUCCuuGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 44931 0.66 0.786159
Target:  5'- gCCGCCGaggagaguuCGGCGCUGGaGAGCcuGCUGcGGg -3'
miRNA:   3'- -GGCGGC---------GCCGUGGUC-CUUG--UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 29114 0.66 0.768181
Target:  5'- aCGCCGaggggagcccUGGCGCCgGGGGGCGCCccgccGGa -3'
miRNA:   3'- gGCGGC----------GCCGUGG-UCCUUGUGGca---CC- -5'
23793 5' -59.5 NC_005261.1 + 108184 0.66 0.777231
Target:  5'- gCgGCCGCGGCuCCGGGcgcgagagcuGCGCCa--- -3'
miRNA:   3'- -GgCGGCGCCGuGGUCCu---------UGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 14985 0.66 0.768181
Target:  5'- gCgGCCGCGccggccGCGCCcGGAGCGCgGgaGGa -3'
miRNA:   3'- -GgCGGCGC------CGUGGuCCUUGUGgCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 126056 0.66 0.794959
Target:  5'- cCCGCUcCGGCGCCAGccgccCGCCGg-- -3'
miRNA:   3'- -GGCGGcGCCGUGGUCcuu--GUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 82804 0.66 0.768181
Target:  5'- uCCGCCGCGGCcACCuGcAGC-CgGUGc -3'
miRNA:   3'- -GGCGGCGCCG-UGGuCcUUGuGgCACc -5'
23793 5' -59.5 NC_005261.1 + 109055 0.66 0.803621
Target:  5'- gCCGCCagguagcccaGCGGCGCCucGGcGAucAUGCCGuUGGc -3'
miRNA:   3'- -GGCGG----------CGCCGUGG--UC-CU--UGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 95031 0.66 0.777231
Target:  5'- gCCGCCgGCGGCGCUcGG--CGCCGc-- -3'
miRNA:   3'- -GGCGG-CGCCGUGGuCCuuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 59606 0.66 0.803621
Target:  5'- aCCuCCGCGGCGCgGcGGAugaGCGCCa-GGa -3'
miRNA:   3'- -GGcGGCGCCGUGgU-CCU---UGUGGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 137794 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 50991 0.66 0.803621
Target:  5'- gCCGaCgGCGGCGCguGG-GCGCgGcGGg -3'
miRNA:   3'- -GGC-GgCGCCGUGguCCuUGUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 59491 0.66 0.801037
Target:  5'- -nGCCGCcGCGCCAGcGGcggcggucgcacgcGCGCCcUGGa -3'
miRNA:   3'- ggCGGCGcCGUGGUC-CU--------------UGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 34085 0.66 0.759018
Target:  5'- uCCGCCGCuGGCuggAGGGGCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGuggUCCUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 109558 0.66 0.794959
Target:  5'- aCCGCCGCGGC-CCcccu-CGCCGcUGc -3'
miRNA:   3'- -GGCGGCGCCGuGGuccuuGUGGC-ACc -5'
23793 5' -59.5 NC_005261.1 + 74413 0.66 0.768181
Target:  5'- uCgGCCGCGGg--CGGGAGgGCCGaGGa -3'
miRNA:   3'- -GgCGGCGCCgugGUCCUUgUGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.