miRNA display CGI


Results 81 - 100 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 37131 0.67 0.711798
Target:  5'- gCCgGCCGUGGCACCGaguGGcauGGCACCa--- -3'
miRNA:   3'- -GG-CGGCGCCGUGGU---CC---UUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 103607 0.67 0.711798
Target:  5'- gCCGCgGCGGCAgCGcGGGAgGCgGcGGc -3'
miRNA:   3'- -GGCGgCGCCGUgGU-CCUUgUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 91153 0.67 0.723314
Target:  5'- gCCGCCcggcgaguggcccggGCGGCagcucccGCCGGGcuucgcgcgcuucGGCGCCGUGc -3'
miRNA:   3'- -GGCGG---------------CGCCG-------UGGUCC-------------UUGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 39856 0.67 0.721402
Target:  5'- cCCGCCG-GGCGcCCAGGcACACgGc-- -3'
miRNA:   3'- -GGCGGCgCCGU-GGUCCuUGUGgCacc -5'
23793 5' -59.5 NC_005261.1 + 29407 0.67 0.730934
Target:  5'- gCCGCgcgcuaCGCGGCgGCCGcGGGGCccgcgGCCGUGu -3'
miRNA:   3'- -GGCG------GCGCCG-UGGU-CCUUG-----UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 73483 0.67 0.725223
Target:  5'- -gGCCGCGGCGCggcgcgcggacgcggCgAGGAucccacuuaagGCGuCCGUGGg -3'
miRNA:   3'- ggCGGCGCCGUG---------------G-UCCU-----------UGU-GGCACC- -5'
23793 5' -59.5 NC_005261.1 + 74703 0.67 0.730934
Target:  5'- gCCGCCGCgcgGGCGC--GGAACcggGCCGcGGc -3'
miRNA:   3'- -GGCGGCG---CCGUGguCCUUG---UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 102816 0.67 0.721402
Target:  5'- gCCGCCGC-GCGCCGGucuGCGCCu--- -3'
miRNA:   3'- -GGCGGCGcCGUGGUCcu-UGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 58228 0.67 0.728082
Target:  5'- gCGcCCGCGGCGgCGGGGuccucggccaugccGCGCCGc-- -3'
miRNA:   3'- gGC-GGCGCCGUgGUCCU--------------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 116661 0.67 0.711798
Target:  5'- gCCGCCgaccugcuccGCGGCGCCGGcccaaucgcGAGCGCCu--- -3'
miRNA:   3'- -GGCGG----------CGCCGUGGUC---------CUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 103204 0.67 0.75347
Target:  5'- gCGCgGCGGCGCCuccugcAGGAAgcgcgcgcaguccucCGCCGUc- -3'
miRNA:   3'- gGCGgCGCCGUGG------UCCUU---------------GUGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 95143 0.67 0.74975
Target:  5'- uCCGCCuGCuGGuCGCCGGGAACcuGCaGUGcGg -3'
miRNA:   3'- -GGCGG-CG-CC-GUGGUCCUUG--UGgCAC-C- -5'
23793 5' -59.5 NC_005261.1 + 110982 0.67 0.74975
Target:  5'- aCGCCGCcuucguGCGCCuGGGGACGCUGc-- -3'
miRNA:   3'- gGCGGCGc-----CGUGG-UCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 4217 0.67 0.711798
Target:  5'- gCGUCGCGGCgcgcguacACCAGGucCACCa--- -3'
miRNA:   3'- gGCGGCGCCG--------UGGUCCuuGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 3825 0.67 0.710834
Target:  5'- gCUGCCGCgGGC-CCGGGcgcuggcggcagcGGCGCCGg-- -3'
miRNA:   3'- -GGCGGCG-CCGuGGUCC-------------UUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 6214 0.67 0.730934
Target:  5'- cCCGCCcagaccugGCGGU-CCAGGuGCGCCcggGGa -3'
miRNA:   3'- -GGCGG--------CGCCGuGGUCCuUGUGGca-CC- -5'
23793 5' -59.5 NC_005261.1 + 118002 0.67 0.711798
Target:  5'- aCgGCgGCGGCGCU--GGACGCUGUcGGa -3'
miRNA:   3'- -GgCGgCGCCGUGGucCUUGUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 31134 0.67 0.711798
Target:  5'- uCCGCCGCGuGCcgcCCGGGGAgUACCa--- -3'
miRNA:   3'- -GGCGGCGC-CGu--GGUCCUU-GUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 73036 0.67 0.710834
Target:  5'- gCCGUCGCGccacgcgccccccGCGCCuAGGAagGCGCaCGUGu -3'
miRNA:   3'- -GGCGGCGC-------------CGUGG-UCCU--UGUG-GCACc -5'
23793 5' -59.5 NC_005261.1 + 121209 0.67 0.711798
Target:  5'- -gGCCGCGG-GCCGGaGAcugcaGCACCGcaUGGc -3'
miRNA:   3'- ggCGGCGCCgUGGUC-CU-----UGUGGC--ACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.