miRNA display CGI


Results 21 - 40 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 29240 0.77 0.224921
Target:  5'- aCGCCGCGGCGCCGcgcgacGGGcCGCCGccgcUGGa -3'
miRNA:   3'- gGCGGCGCCGUGGU------CCUuGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 8829 0.77 0.224921
Target:  5'- cCCGCCG-GGCAagggggCGGGGACagGCCGUGGg -3'
miRNA:   3'- -GGCGGCgCCGUg-----GUCCUUG--UGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 53030 0.77 0.224921
Target:  5'- gCUuCCGCGGCGCCGGGGcaGCCGUcGGg -3'
miRNA:   3'- -GGcGGCGCCGUGGUCCUugUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 31681 0.77 0.221756
Target:  5'- -gGCCGCGGCGCgGcGGcggcugaucgugaucGACGCCGUGGa -3'
miRNA:   3'- ggCGGCGCCGUGgU-CC---------------UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 81518 0.77 0.219666
Target:  5'- gCCGCCGcCGGCGCCAGGcGCugCa-GGa -3'
miRNA:   3'- -GGCGGC-GCCGUGGUCCuUGugGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 93678 0.77 0.219666
Target:  5'- -gGCgGCGGCGCCGgcGGGGCGCCGgcgGGu -3'
miRNA:   3'- ggCGgCGCCGUGGU--CCUUGUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 103862 0.77 0.214517
Target:  5'- gCCGCgGCGGCGgCGGGGcgGCGCCGccGGg -3'
miRNA:   3'- -GGCGgCGCCGUgGUCCU--UGUGGCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 31940 0.76 0.26474
Target:  5'- uCUGCCGCGGCGCCAacgugcgcuACACgGUGGc -3'
miRNA:   3'- -GGCGGCGCCGUGGUccu------UGUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 60247 0.76 0.270874
Target:  5'- uCCGCCGCGGC---GGGAGCggcgGCCGUGa -3'
miRNA:   3'- -GGCGGCGCCGuggUCCUUG----UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 32543 0.76 0.270874
Target:  5'- cCCgGCCGCGGCG-CGGGccGGCGCgCGUGGa -3'
miRNA:   3'- -GG-CGGCGCCGUgGUCC--UUGUG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 75857 0.76 0.270874
Target:  5'- gCGCCGaCGGCgGCCccGAcgGCGCCGUGGg -3'
miRNA:   3'- gGCGGC-GCCG-UGGucCU--UGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 30979 0.76 0.275236
Target:  5'- cCCGCCGCGGCgcaagcgcaagucgGCCGGGGccaggggcccgGCGCCGg-- -3'
miRNA:   3'- -GGCGGCGCCG--------------UGGUCCU-----------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 71610 0.76 0.25872
Target:  5'- gCCGCCGCGGC-CCGGGcGCGggcCCG-GGc -3'
miRNA:   3'- -GGCGGCGCCGuGGUCCuUGU---GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 2549 0.76 0.25872
Target:  5'- gCGCCGCGGCGCUGGGcGCggGCgUGUGGu -3'
miRNA:   3'- gGCGGCGCCGUGGUCCuUG--UG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 127856 0.76 0.256935
Target:  5'- gCgGUCGCGGCGCCAGGGcacgagcgggagucGCGCCGg-- -3'
miRNA:   3'- -GgCGGCGCCGUGGUCCU--------------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 117536 0.76 0.247014
Target:  5'- uCCaCCGCGGCGCCggAGGGGCugACCGUGu -3'
miRNA:   3'- -GGcGGCGCCGUGG--UCCUUG--UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 44260 0.76 0.247014
Target:  5'- aCGCCGCGGCGCgCGGGGGgGCgG-GGc -3'
miRNA:   3'- gGCGGCGCCGUG-GUCCUUgUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 9334 0.76 0.247014
Target:  5'- gCCGCCGaCGaGCccACCGGGAGCACCGc-- -3'
miRNA:   3'- -GGCGGC-GC-CG--UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 83489 0.76 0.247014
Target:  5'- gCCGCCGUaGaGCGCCAGGcgcgcGCGCCgGUGGa -3'
miRNA:   3'- -GGCGGCG-C-CGUGGUCCu----UGUGG-CACC- -5'
23793 5' -59.5 NC_005261.1 + 114815 0.76 0.277122
Target:  5'- gCGCCGCaGCACCAccuacacGGGCACCGUGa -3'
miRNA:   3'- gGCGGCGcCGUGGUc------CUUGUGGCACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.