Results 61 - 80 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23793 | 5' | -59.5 | NC_005261.1 | + | 90546 | 0.74 | 0.361112 |
Target: 5'- cCCGCCGCcGCGCCcgAGGAG-GCCGUGc -3' miRNA: 3'- -GGCGGCGcCGUGG--UCCUUgUGGCACc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 70815 | 0.74 | 0.353476 |
Target: 5'- gCGCCgGCGGCcCCGGGcGCGCCGg-- -3' miRNA: 3'- gGCGG-CGCCGuGGUCCuUGUGGCacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 33498 | 0.74 | 0.353476 |
Target: 5'- -gGcCCGCGaGCACCAGGGgcggcggcgGCACCGcUGGc -3' miRNA: 3'- ggC-GGCGC-CGUGGUCCU---------UGUGGC-ACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 97312 | 0.74 | 0.343721 |
Target: 5'- uCCGuCCGCGGgGCCGGGGcccgauagggcaaaGCcagagccaaugACCGUGGg -3' miRNA: 3'- -GGC-GGCGCCgUGGUCCU--------------UG-----------UGGCACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 44289 | 0.74 | 0.323374 |
Target: 5'- gCCGCCaGCGGCggGCCAGGGccgcugcccgcggGCGCCGcagacgGGg -3' miRNA: 3'- -GGCGG-CGCCG--UGGUCCU-------------UGUGGCa-----CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 108324 | 0.74 | 0.323374 |
Target: 5'- gCCGCCGCGugcuccgcgacccGCGCCAGGGcCGCCGc-- -3' miRNA: 3'- -GGCGGCGC-------------CGUGGUCCUuGUGGCacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 110245 | 0.74 | 0.324086 |
Target: 5'- gCGgCGCGGCGCCcgGGGGGCugCG-GGc -3' miRNA: 3'- gGCgGCGCCGUGG--UCCUUGugGCaCC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 108748 | 0.74 | 0.337815 |
Target: 5'- gCGCCGCGGCGuCCGcGGcGCGCCGcgccacggcaccaUGGg -3' miRNA: 3'- gGCGGCGCCGU-GGU-CCuUGUGGC-------------ACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 68082 | 0.74 | 0.338549 |
Target: 5'- gUCGcCCGCGGgGgCGGGGAgGCCGUGa -3' miRNA: 3'- -GGC-GGCGCCgUgGUCCUUgUGGCACc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 13665 | 0.74 | 0.338549 |
Target: 5'- gCCGCCGCggggggGGCGCgGGGcGCGCgggCGUGGg -3' miRNA: 3'- -GGCGGCG------CCGUGgUCCuUGUG---GCACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 64677 | 0.73 | 0.392787 |
Target: 5'- gCCGUggUGCGGCACCGGGcGCGucCCG-GGg -3' miRNA: 3'- -GGCG--GCGCCGUGGUCCuUGU--GGCaCC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 14362 | 0.73 | 0.392787 |
Target: 5'- -aGCCGCGGC-CgGGGcGGCGCgGUGGc -3' miRNA: 3'- ggCGGCGCCGuGgUCC-UUGUGgCACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 118446 | 0.73 | 0.3847 |
Target: 5'- gCCGCCGCGGCGCUAGaaGACACUu--- -3' miRNA: 3'- -GGCGGCGCCGUGGUCc-UUGUGGcacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 88185 | 0.73 | 0.3847 |
Target: 5'- aCGCCgGCGGCGCCGGcGAggcgggccGCGCCGg-- -3' miRNA: 3'- gGCGG-CGCCGUGGUC-CU--------UGUGGCacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 34453 | 0.73 | 0.3847 |
Target: 5'- gCGCCGgGGCacggGCCGGGGGCcCCGUa- -3' miRNA: 3'- gGCGGCgCCG----UGGUCCUUGuGGCAcc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 127641 | 0.73 | 0.3847 |
Target: 5'- aCgGCgGCGGCGCCGGGGggcGCGCgGguucgGGg -3' miRNA: 3'- -GgCGgCGCCGUGGUCCU---UGUGgCa----CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 93826 | 0.73 | 0.376725 |
Target: 5'- aCCGCCGCaGcCGCCGGGcGGCGCCGc-- -3' miRNA: 3'- -GGCGGCGcC-GUGGUCC-UUGUGGCacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 54146 | 0.73 | 0.375934 |
Target: 5'- gCCGCaCGCGGCcgugcgcgggguuGCCGGGAAgACCaagGGg -3' miRNA: 3'- -GGCG-GCGCCG-------------UGGUCCUUgUGGca-CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 59459 | 0.73 | 0.368862 |
Target: 5'- gCgGCCGCGGCGUCGGGGggcaGCGCCGgcgcGGc -3' miRNA: 3'- -GgCGGCGCCGUGGUCCU----UGUGGCa---CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 61308 | 0.73 | 0.392787 |
Target: 5'- aCUGCCGCc-CACCuGGGAGCGCgGUGGc -3' miRNA: 3'- -GGCGGCGccGUGG-UCCUUGUGgCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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