miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 53030 0.77 0.224921
Target:  5'- gCUuCCGCGGCGCCGGGGcaGCCGUcGGg -3'
miRNA:   3'- -GGcGGCGCCGUGGUCCUugUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 2604 0.77 0.230282
Target:  5'- gCCGCCGuCGGCGgCGGGGcCGCCG-GGc -3'
miRNA:   3'- -GGCGGC-GCCGUgGUCCUuGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 102947 0.77 0.230282
Target:  5'- gCCGCUGCGGCggcgGCCGcGGGCGCCGcGGg -3'
miRNA:   3'- -GGCGGCGCCG----UGGUcCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 98129 0.77 0.235199
Target:  5'- aCGCCGCGGCACCGGcGGCcgucggcggcaagGCCGcGGg -3'
miRNA:   3'- gGCGGCGCCGUGGUCcUUG-------------UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 43796 0.77 0.23575
Target:  5'- gCGCCGCgggugagggGGCGCCGGGcGCGCCcuccGUGGa -3'
miRNA:   3'- gGCGGCG---------CCGUGGUCCuUGUGG----CACC- -5'
23793 5' -59.5 NC_005261.1 + 94078 0.77 0.241328
Target:  5'- aCCGCCGC--CGCCGGGAACGCCGc-- -3'
miRNA:   3'- -GGCGGCGccGUGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 33585 0.77 0.241328
Target:  5'- gCC-CCGCGaGCACCAGGGgcgGCGCCGgcgcGGg -3'
miRNA:   3'- -GGcGGCGC-CGUGGUCCU---UGUGGCa---CC- -5'
23793 5' -59.5 NC_005261.1 + 16263 0.76 0.24644
Target:  5'- gCCGCCGgGGCcgggcuucggcucGCCcggGGGGGCGCCGUcGGg -3'
miRNA:   3'- -GGCGGCgCCG-------------UGG---UCCUUGUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 117536 0.76 0.247014
Target:  5'- uCCaCCGCGGCGCCggAGGGGCugACCGUGu -3'
miRNA:   3'- -GGcGGCGCCGUGG--UCCUUG--UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 44260 0.76 0.247014
Target:  5'- aCGCCGCGGCGCgCGGGGGgGCgG-GGc -3'
miRNA:   3'- gGCGGCGCCGUG-GUCCUUgUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 9334 0.76 0.247014
Target:  5'- gCCGCCGaCGaGCccACCGGGAGCACCGc-- -3'
miRNA:   3'- -GGCGGC-GC-CG--UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 83489 0.76 0.247014
Target:  5'- gCCGCCGUaGaGCGCCAGGcgcgcGCGCCgGUGGa -3'
miRNA:   3'- -GGCGGCG-C-CGUGGUCCu----UGUGG-CACC- -5'
23793 5' -59.5 NC_005261.1 + 127856 0.76 0.256935
Target:  5'- gCgGUCGCGGCGCCAGGGcacgagcgggagucGCGCCGg-- -3'
miRNA:   3'- -GgCGGCGCCGUGGUCCU--------------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 2549 0.76 0.25872
Target:  5'- gCGCCGCGGCGCUGGGcGCggGCgUGUGGu -3'
miRNA:   3'- gGCGGCGCCGUGGUCCuUG--UG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 71610 0.76 0.25872
Target:  5'- gCCGCCGCGGC-CCGGGcGCGggcCCG-GGc -3'
miRNA:   3'- -GGCGGCGCCGuGGUCCuUGU---GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 31940 0.76 0.26474
Target:  5'- uCUGCCGCGGCGCCAacgugcgcuACACgGUGGc -3'
miRNA:   3'- -GGCGGCGCCGUGGUccu------UGUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 60247 0.76 0.270874
Target:  5'- uCCGCCGCGGC---GGGAGCggcgGCCGUGa -3'
miRNA:   3'- -GGCGGCGCCGuggUCCUUG----UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 32543 0.76 0.270874
Target:  5'- cCCgGCCGCGGCG-CGGGccGGCGCgCGUGGa -3'
miRNA:   3'- -GG-CGGCGCCGUgGUCC--UUGUG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 75857 0.76 0.270874
Target:  5'- gCGCCGaCGGCgGCCccGAcgGCGCCGUGGg -3'
miRNA:   3'- gGCGGC-GCCG-UGGucCU--UGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 30979 0.76 0.275236
Target:  5'- cCCGCCGCGGCgcaagcgcaagucgGCCGGGGccaggggcccgGCGCCGg-- -3'
miRNA:   3'- -GGCGGCGCCG--------------UGGUCCU-----------UGUGGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.