miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 114815 0.76 0.277122
Target:  5'- gCGCCGCaGCACCAccuacacGGGCACCGUGa -3'
miRNA:   3'- gGCGGCGcCGUGGUc------CUUGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 51424 0.75 0.283484
Target:  5'- aCCGCCuGCugGGCcCCGGGcGCGCCGUGa -3'
miRNA:   3'- -GGCGG-CG--CCGuGGUCCuUGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 33304 0.75 0.289961
Target:  5'- cCCGUCGCGGgACCAGGAcCGCUGc-- -3'
miRNA:   3'- -GGCGGCGCCgUGGUCCUuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 119553 0.75 0.292584
Target:  5'- cCCGCCGCGGgGCCGcaaguGGAugcgcugcgagcgcgAgACCGUGGc -3'
miRNA:   3'- -GGCGGCGCCgUGGU-----CCU---------------UgUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 53558 0.75 0.29589
Target:  5'- gCGCCGCGGC-CCAGGcGCacuagcgGCCGcGGg -3'
miRNA:   3'- gGCGGCGCCGuGGUCCuUG-------UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 37430 0.75 0.296554
Target:  5'- aCGCCGUGGCGCgCGGGcuCGCCGa-- -3'
miRNA:   3'- gGCGGCGCCGUG-GUCCuuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 127692 0.75 0.296554
Target:  5'- gCUGCCccgGCGGCGCCggAGGAGCuGCgCGUGGc -3'
miRNA:   3'- -GGCGG---CGCCGUGG--UCCUUG-UG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 45937 0.75 0.302586
Target:  5'- cCCGCCGCGcGCgagggccGCCAGG-GCGCCGUu- -3'
miRNA:   3'- -GGCGGCGC-CG-------UGGUCCuUGUGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 103535 0.75 0.308028
Target:  5'- uCCGCCGCcuccucggcccccgGGC-CCAGGGGCcCCGUGc -3'
miRNA:   3'- -GGCGGCG--------------CCGuGGUCCUUGuGGCACc -5'
23793 5' -59.5 NC_005261.1 + 32415 0.75 0.310087
Target:  5'- gCCGCCGcCGGCGaCGGGAGCcccGCCGgccUGGg -3'
miRNA:   3'- -GGCGGC-GCCGUgGUCCUUG---UGGC---ACC- -5'
23793 5' -59.5 NC_005261.1 + 72476 0.75 0.317028
Target:  5'- gCGCgagCGCGGCcagcGCCAGGAGCGCCGc-- -3'
miRNA:   3'- gGCG---GCGCCG----UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 4947 0.75 0.317028
Target:  5'- gCGCCGCGGC-CCAGGcGCccccgGCCGcGGc -3'
miRNA:   3'- gGCGGCGCCGuGGUCCuUG-----UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 107689 0.75 0.317028
Target:  5'- gCCGCCGCGGC---GGGGGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCGuggUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 100577 0.75 0.317028
Target:  5'- aCCGCCGCcucgucGC-CCAGGAGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGc-----CGuGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 33042 0.75 0.317028
Target:  5'- gCGuCCGCGGaggGCCAGGAcucgGCGCCG-GGg -3'
miRNA:   3'- gGC-GGCGCCg--UGGUCCU----UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 44289 0.74 0.323374
Target:  5'- gCCGCCaGCGGCggGCCAGGGccgcugcccgcggGCGCCGcagacgGGg -3'
miRNA:   3'- -GGCGG-CGCCG--UGGUCCU-------------UGUGGCa-----CC- -5'
23793 5' -59.5 NC_005261.1 + 108324 0.74 0.323374
Target:  5'- gCCGCCGCGugcuccgcgacccGCGCCAGGGcCGCCGc-- -3'
miRNA:   3'- -GGCGGCGC-------------CGUGGUCCUuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 110245 0.74 0.324086
Target:  5'- gCGgCGCGGCGCCcgGGGGGCugCG-GGc -3'
miRNA:   3'- gGCgGCGCCGUGG--UCCUUGugGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 108748 0.74 0.337815
Target:  5'- gCGCCGCGGCGuCCGcGGcGCGCCGcgccacggcaccaUGGg -3'
miRNA:   3'- gGCGGCGCCGU-GGU-CCuUGUGGC-------------ACC- -5'
23793 5' -59.5 NC_005261.1 + 13665 0.74 0.338549
Target:  5'- gCCGCCGCggggggGGCGCgGGGcGCGCgggCGUGGg -3'
miRNA:   3'- -GGCGGCG------CCGUGgUCCuUGUG---GCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.