miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 13665 0.74 0.338549
Target:  5'- gCCGCCGCggggggGGCGCgGGGcGCGCgggCGUGGg -3'
miRNA:   3'- -GGCGGCG------CCGUGgUCCuUGUG---GCACC- -5'
23793 5' -59.5 NC_005261.1 + 97312 0.74 0.343721
Target:  5'- uCCGuCCGCGGgGCCGGGGcccgauagggcaaaGCcagagccaaugACCGUGGg -3'
miRNA:   3'- -GGC-GGCGCCgUGGUCCU--------------UG-----------UGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 33498 0.74 0.353476
Target:  5'- -gGcCCGCGaGCACCAGGGgcggcggcgGCACCGcUGGc -3'
miRNA:   3'- ggC-GGCGC-CGUGGUCCU---------UGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 70815 0.74 0.353476
Target:  5'- gCGCCgGCGGCcCCGGGcGCGCCGg-- -3'
miRNA:   3'- gGCGG-CGCCGuGGUCCuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 29193 0.74 0.353476
Target:  5'- cUCGCCGCGGCGCCcgcGcGGGCGCgCGacUGGg -3'
miRNA:   3'- -GGCGGCGCCGUGGu--C-CUUGUG-GC--ACC- -5'
23793 5' -59.5 NC_005261.1 + 42813 0.74 0.353476
Target:  5'- aCGuCCGCGGCcgcGCCGgccGGAGCACC-UGGg -3'
miRNA:   3'- gGC-GGCGCCG---UGGU---CCUUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 134358 0.74 0.353476
Target:  5'- gCGCCGCcGCGCgGGGGgcgGCGCCGcUGGc -3'
miRNA:   3'- gGCGGCGcCGUGgUCCU---UGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 3685 0.74 0.361112
Target:  5'- -gGCCGCGGCccgcugcaGCCGaGAGCACCG-GGa -3'
miRNA:   3'- ggCGGCGCCG--------UGGUcCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 32323 0.74 0.361112
Target:  5'- gCgGCCGCGGCGCCcGGcGugGCC-UGGg -3'
miRNA:   3'- -GgCGGCGCCGUGGuCC-UugUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 90546 0.74 0.361112
Target:  5'- cCCGCCGCcGCGCCcgAGGAG-GCCGUGc -3'
miRNA:   3'- -GGCGGCGcCGUGG--UCCUUgUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 83848 0.73 0.368082
Target:  5'- -gGCCGCGGCcccgcugggcuggGCCGGGccgGACGCCG-GGu -3'
miRNA:   3'- ggCGGCGCCG-------------UGGUCC---UUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 59459 0.73 0.368862
Target:  5'- gCgGCCGCGGCGUCGGGGggcaGCGCCGgcgcGGc -3'
miRNA:   3'- -GgCGGCGCCGUGGUCCU----UGUGGCa---CC- -5'
23793 5' -59.5 NC_005261.1 + 54146 0.73 0.375934
Target:  5'- gCCGCaCGCGGCcgugcgcgggguuGCCGGGAAgACCaagGGg -3'
miRNA:   3'- -GGCG-GCGCCG-------------UGGUCCUUgUGGca-CC- -5'
23793 5' -59.5 NC_005261.1 + 93826 0.73 0.376725
Target:  5'- aCCGCCGCaGcCGCCGGGcGGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGcC-GUGGUCC-UUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 127641 0.73 0.3847
Target:  5'- aCgGCgGCGGCGCCGGGGggcGCGCgGguucgGGg -3'
miRNA:   3'- -GgCGgCGCCGUGGUCCU---UGUGgCa----CC- -5'
23793 5' -59.5 NC_005261.1 + 34453 0.73 0.3847
Target:  5'- gCGCCGgGGCacggGCCGGGGGCcCCGUa- -3'
miRNA:   3'- gGCGGCgCCG----UGGUCCUUGuGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 88185 0.73 0.3847
Target:  5'- aCGCCgGCGGCGCCGGcGAggcgggccGCGCCGg-- -3'
miRNA:   3'- gGCGG-CGCCGUGGUC-CU--------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 118446 0.73 0.3847
Target:  5'- gCCGCCGCGGCGCUAGaaGACACUu--- -3'
miRNA:   3'- -GGCGGCGCCGUGGUCc-UUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 64677 0.73 0.392787
Target:  5'- gCCGUggUGCGGCACCGGGcGCGucCCG-GGg -3'
miRNA:   3'- -GGCG--GCGCCGUGGUCCuUGU--GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 61308 0.73 0.392787
Target:  5'- aCUGCCGCc-CACCuGGGAGCGCgGUGGc -3'
miRNA:   3'- -GGCGGCGccGUGG-UCCUUGUGgCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.