miRNA display CGI


Results 81 - 100 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 64677 0.73 0.392787
Target:  5'- gCCGUggUGCGGCACCGGGcGCGucCCG-GGg -3'
miRNA:   3'- -GGCG--GCGCCGUGGUCCuUGU--GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 14362 0.73 0.392787
Target:  5'- -aGCCGCGGC-CgGGGcGGCGCgGUGGc -3'
miRNA:   3'- ggCGGCGCCGuGgUCC-UUGUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 76124 0.73 0.398513
Target:  5'- gCGCCGCgccGGCGCCcgucguggAGGucguggcggcgcacGACGCCGUGGc -3'
miRNA:   3'- gGCGGCG---CCGUGG--------UCC--------------UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 131759 0.73 0.400983
Target:  5'- aCGCCGgcCGGCGCggCGGGcGCGCCGcUGGg -3'
miRNA:   3'- gGCGGC--GCCGUG--GUCCuUGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 70938 0.73 0.409288
Target:  5'- gCGCCuGCGcGUccGCCGGGAACGCCGa-- -3'
miRNA:   3'- gGCGG-CGC-CG--UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 64869 0.72 0.417698
Target:  5'- gCGUCccagaucaGCGGCGgCGGGAGCGCCG-GGu -3'
miRNA:   3'- gGCGG--------CGCCGUgGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 104892 0.72 0.417698
Target:  5'- gCCGCCGCGuGCGCCcGGAcgcccuccaGgGCCGcGGu -3'
miRNA:   3'- -GGCGGCGC-CGUGGuCCU---------UgUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 81373 0.72 0.417698
Target:  5'- gCGCCG-GGCucGCUGGGGGCGCCG-GGc -3'
miRNA:   3'- gGCGGCgCCG--UGGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 1180 0.72 0.417698
Target:  5'- gCGCCGCGGCcggggccgggGCCGGGcGCGgCGcGGa -3'
miRNA:   3'- gGCGGCGCCG----------UGGUCCuUGUgGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 118546 0.72 0.426213
Target:  5'- cCUGCgGCGcGCGCgAGGA-CGCCGUGc -3'
miRNA:   3'- -GGCGgCGC-CGUGgUCCUuGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 61556 0.72 0.426213
Target:  5'- gCCGCCgacgaucugaugGUGGCGCUGGuGAugGCCGUGu -3'
miRNA:   3'- -GGCGG------------CGCCGUGGUC-CUugUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 35907 0.72 0.426213
Target:  5'- cCCGCCGCGGCAgCGcGGccccGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCGUgGU-CCu---UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 88589 0.72 0.433964
Target:  5'- gCCGCCgaggcccggcccgGCGGCGCCAcGGucguGACGCUGcUGGg -3'
miRNA:   3'- -GGCGG-------------CGCCGUGGU-CC----UUGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 86934 0.72 0.433964
Target:  5'- gCCGCCGCGcGCGgCGGGcuggucaAAgACCGUGa -3'
miRNA:   3'- -GGCGGCGC-CGUgGUCC-------UUgUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 125717 0.72 0.43483
Target:  5'- gCCGCCGCgGGCucgGCUGGGGcCGCCGcaagGGg -3'
miRNA:   3'- -GGCGGCG-CCG---UGGUCCUuGUGGCa---CC- -5'
23793 5' -59.5 NC_005261.1 + 20245 0.72 0.43483
Target:  5'- uCCGCCGCGcGCuCCAuGGGCGCCGa-- -3'
miRNA:   3'- -GGCGGCGC-CGuGGUcCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 101542 0.72 0.443548
Target:  5'- gCCGCCuCGGCcgccacgaccucGCCgAGGAugcgcucggcgcGCGCCGUGGc -3'
miRNA:   3'- -GGCGGcGCCG------------UGG-UCCU------------UGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 116517 0.72 0.443548
Target:  5'- gCCGCgGCGGCGCgAGGccCGCCGc-- -3'
miRNA:   3'- -GGCGgCGCCGUGgUCCuuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 133508 0.72 0.443548
Target:  5'- aCCGCCuCGGgACCGuGuuCACCGUGGa -3'
miRNA:   3'- -GGCGGcGCCgUGGUcCuuGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 78561 0.72 0.452363
Target:  5'- uCCGCuCGC-GCGCCGGGAcCGCCGa-- -3'
miRNA:   3'- -GGCG-GCGcCGUGGUCCUuGUGGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.