miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 12140 0.66 0.794085
Target:  5'- gCCGCCGCGGCggccgcgcagGCCccaagccccgcacAGGccAGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCG----------UGG-------------UCC--UUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 80046 0.66 0.792333
Target:  5'- gCCGCCGUcgccacuggcggcgGGCGCgGGGGGC---GUGGg -3'
miRNA:   3'- -GGCGGCG--------------CCGUGgUCCUUGuggCACC- -5'
23793 5' -59.5 NC_005261.1 + 127079 0.66 0.792333
Target:  5'- gCCGCCGCcGCGCCGccgcaaugacggcuGG-GCGCgGUGa -3'
miRNA:   3'- -GGCGGCGcCGUGGU--------------CCuUGUGgCACc -5'
23793 5' -59.5 NC_005261.1 + 3484 0.66 0.786159
Target:  5'- gCGCCaGCGGgGCCAcGGuucGCGCCGc-- -3'
miRNA:   3'- gGCGG-CGCCgUGGU-CCu--UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 45413 0.66 0.786159
Target:  5'- cCUGCUGCGGCGCCuGcGccCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCGUGGuC-CuuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 44931 0.66 0.786159
Target:  5'- gCCGCCGaggagaguuCGGCGCUGGaGAGCcuGCUGcGGg -3'
miRNA:   3'- -GGCGGC---------GCCGUGGUC-CUUG--UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 92631 0.66 0.786159
Target:  5'- gCGCgagaGCGGgACCGGGAccgGgACCG-GGa -3'
miRNA:   3'- gGCGg---CGCCgUGGUCCU---UgUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 84285 0.66 0.786159
Target:  5'- gCCGCCgGCGGCcCCGGccccggcGGCGCCGa-- -3'
miRNA:   3'- -GGCGG-CGCCGuGGUCc------UUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 78846 0.66 0.786159
Target:  5'- aCGCCgGCGGCGCCcgccgccGGAGCGCg---- -3'
miRNA:   3'- gGCGG-CGCCGUGGu------CCUUGUGgcacc -5'
23793 5' -59.5 NC_005261.1 + 124093 0.66 0.786159
Target:  5'- cCCGCguaGCGcGCGCaCAGGGccgGCACCGc-- -3'
miRNA:   3'- -GGCGg--CGC-CGUG-GUCCU---UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 125791 0.66 0.786159
Target:  5'- gCCGCUGCgaacggGGCuuggGCCGGGGcCGCCGcgagcgGGg -3'
miRNA:   3'- -GGCGGCG------CCG----UGGUCCUuGUGGCa-----CC- -5'
23793 5' -59.5 NC_005261.1 + 71335 0.66 0.786159
Target:  5'- gCCgGCCGCGaGCGCguccuCGGuGAGCGCCGa-- -3'
miRNA:   3'- -GG-CGGCGC-CGUG-----GUC-CUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 20498 0.66 0.786159
Target:  5'- gCGCUGacagcgGGCcgGCUAGGGACGCCGg-- -3'
miRNA:   3'- gGCGGCg-----CCG--UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 103499 0.66 0.786159
Target:  5'- aCGUCGuCGGCGCCGcGGAcggcgGCGuCCGcGGc -3'
miRNA:   3'- gGCGGC-GCCGUGGU-CCU-----UGU-GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 121628 0.66 0.785272
Target:  5'- cCCGCCGCucGGCggccgccGCCGGcGAGCGCgGg-- -3'
miRNA:   3'- -GGCGGCG--CCG-------UGGUC-CUUGUGgCacc -5'
23793 5' -59.5 NC_005261.1 + 32007 0.66 0.777231
Target:  5'- gCCGCCGCGcgaGUACCGGcAGCG-CGUGc -3'
miRNA:   3'- -GGCGGCGC---CGUGGUCcUUGUgGCACc -5'
23793 5' -59.5 NC_005261.1 + 95031 0.66 0.777231
Target:  5'- gCCGCCgGCGGCGCUcGG--CGCCGc-- -3'
miRNA:   3'- -GGCGG-CGCCGUGGuCCuuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 60854 0.66 0.777231
Target:  5'- -gGUCGC-GCGCCGGGccgagcccGCGCCGUGu -3'
miRNA:   3'- ggCGGCGcCGUGGUCCu-------UGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 108184 0.66 0.777231
Target:  5'- gCgGCCGCGGCuCCGGGcgcgagagcuGCGCCa--- -3'
miRNA:   3'- -GgCGGCGCCGuGGUCCu---------UGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 56128 0.66 0.777231
Target:  5'- gCGCCGCaGgGCgGGGGGCgcggGCCGaGGg -3'
miRNA:   3'- gGCGGCGcCgUGgUCCUUG----UGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.