miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 108184 0.66 0.777231
Target:  5'- gCgGCCGCGGCuCCGGGcgcgagagcuGCGCCa--- -3'
miRNA:   3'- -GgCGGCGCCGuGGUCCu---------UGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 129584 0.66 0.777231
Target:  5'- gCgGCCGC-GCGCCGcGGGACACgCGg-- -3'
miRNA:   3'- -GgCGGCGcCGUGGU-CCUUGUG-GCacc -5'
23793 5' -59.5 NC_005261.1 + 61508 0.66 0.777231
Target:  5'- aCCGCCGgcccCGGCGaggcCCGGGccuucuccggcaAGCGCCGcGGc -3'
miRNA:   3'- -GGCGGC----GCCGU----GGUCC------------UUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 60854 0.66 0.777231
Target:  5'- -gGUCGC-GCGCCGGGccgagcccGCGCCGUGu -3'
miRNA:   3'- ggCGGCGcCGUGGUCCu-------UGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 57383 0.66 0.777231
Target:  5'- cCCGCCaGCaGCuCgGGGAGCGcgcCCGUGa -3'
miRNA:   3'- -GGCGG-CGcCGuGgUCCUUGU---GGCACc -5'
23793 5' -59.5 NC_005261.1 + 118164 0.66 0.777231
Target:  5'- gCCGUCGCGGCG--GGGcuUGCCGUcuGGg -3'
miRNA:   3'- -GGCGGCGCCGUggUCCuuGUGGCA--CC- -5'
23793 5' -59.5 NC_005261.1 + 67965 0.66 0.777231
Target:  5'- gCCGCCGCGGCGau-GGAGuucgcuUACCGc-- -3'
miRNA:   3'- -GGCGGCGCCGUgguCCUU------GUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 120044 0.66 0.777231
Target:  5'- cCCGCCGCGcuccacGCGCCugcgcuGGuuccGCAacggcuaccCCGUGGa -3'
miRNA:   3'- -GGCGGCGC------CGUGGu-----CCu---UGU---------GGCACC- -5'
23793 5' -59.5 NC_005261.1 + 56128 0.66 0.777231
Target:  5'- gCGCCGCaGgGCgGGGGGCgcggGCCGaGGg -3'
miRNA:   3'- gGCGGCGcCgUGgUCCUUG----UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 127283 0.66 0.776331
Target:  5'- cCCGCCGCGGgggcagcccucccCGCCGGcug-GCgGUGGg -3'
miRNA:   3'- -GGCGGCGCC-------------GUGGUCcuugUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 73351 0.66 0.774528
Target:  5'- uCCGCCcggcgccggcucagGCGGCGCCAGcAGCGCgGc-- -3'
miRNA:   3'- -GGCGG--------------CGCCGUGGUCcUUGUGgCacc -5'
23793 5' -59.5 NC_005261.1 + 104676 0.66 0.774528
Target:  5'- gUGCUGCGGCagcGCCuGGGcCACCGccccgaagagcggcUGGa -3'
miRNA:   3'- gGCGGCGCCG---UGGuCCUuGUGGC--------------ACC- -5'
23793 5' -59.5 NC_005261.1 + 1873 0.66 0.771815
Target:  5'- gCGCCGCGaggccagcacggcgcGCGCCAGcGcGCGCCGc-- -3'
miRNA:   3'- gGCGGCGC---------------CGUGGUC-CuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 93768 0.66 0.771815
Target:  5'- gCGCgCGCGGCGucgcagcaggugcccCCGGGAcgccGCGCCGc-- -3'
miRNA:   3'- gGCG-GCGCCGU---------------GGUCCU----UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 83613 0.66 0.771815
Target:  5'- uCCGCCGCGGCgugguccagcGCgAGGuccagcgcguacgucAGCGgCGUGa -3'
miRNA:   3'- -GGCGGCGCCG----------UGgUCC---------------UUGUgGCACc -5'
23793 5' -59.5 NC_005261.1 + 123230 0.66 0.771815
Target:  5'- gCCGCCuaGCGGCcgcCCAGGcGCGggccccgcccaucgcCCGUGa -3'
miRNA:   3'- -GGCGG--CGCCGu--GGUCCuUGU---------------GGCACc -5'
23793 5' -59.5 NC_005261.1 + 74413 0.66 0.768181
Target:  5'- uCgGCCGCGGg--CGGGAGgGCCGaGGa -3'
miRNA:   3'- -GgCGGCGCCgugGUCCUUgUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 132360 0.66 0.768181
Target:  5'- uCCGCCGCGGCGCgCucgccGCGCuCGcGGc -3'
miRNA:   3'- -GGCGGCGCCGUG-Guccu-UGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 29114 0.66 0.768181
Target:  5'- aCGCCGaggggagcccUGGCGCCgGGGGGCGCCccgccGGa -3'
miRNA:   3'- gGCGGC----------GCCGUGG-UCCUUGUGGca---CC- -5'
23793 5' -59.5 NC_005261.1 + 14985 0.66 0.768181
Target:  5'- gCgGCCGCGccggccGCGCCcGGAGCGCgGgaGGa -3'
miRNA:   3'- -GgCGGCGC------CGUGGuCCUUGUGgCa-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.