Results 61 - 80 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23793 | 5' | -59.5 | NC_005261.1 | + | 32160 | 0.66 | 0.768181 |
Target: 5'- gCCGCUGCGGCcgguguaccugGCCugcGGGcGGCGCgCGcUGGa -3' miRNA: 3'- -GGCGGCGCCG-----------UGG---UCC-UUGUG-GC-ACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 29114 | 0.66 | 0.768181 |
Target: 5'- aCGCCGaggggagcccUGGCGCCgGGGGGCGCCccgccGGa -3' miRNA: 3'- gGCGGC----------GCCGUGG-UCCUUGUGGca---CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 132360 | 0.66 | 0.768181 |
Target: 5'- uCCGCCGCGGCGCgCucgccGCGCuCGcGGc -3' miRNA: 3'- -GGCGGCGCCGUG-Guccu-UGUG-GCaCC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 100505 | 0.66 | 0.768181 |
Target: 5'- gUGCCGuCGGCGuCCAGGua-GCCGcgcGGc -3' miRNA: 3'- gGCGGC-GCCGU-GGUCCuugUGGCa--CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 97695 | 0.66 | 0.759018 |
Target: 5'- gCUGCCGgGGCGgUGGGGAgACgGcGGg -3' miRNA: 3'- -GGCGGCgCCGUgGUCCUUgUGgCaCC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 23473 | 0.66 | 0.759018 |
Target: 5'- cCCGCgGCGGCgaguGCgCGGGccCGCC-UGGg -3' miRNA: 3'- -GGCGgCGCCG----UG-GUCCuuGUGGcACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 4415 | 0.66 | 0.759018 |
Target: 5'- gCGCUGCcGgGCCAGGccuCGCCGgagGGc -3' miRNA: 3'- gGCGGCGcCgUGGUCCuu-GUGGCa--CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 7900 | 0.66 | 0.759018 |
Target: 5'- uCCGgCGCGGCGCCAccaGAugGCGCC-UGa -3' miRNA: 3'- -GGCgGCGCCGUGGUc--CU--UGUGGcACc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 34085 | 0.66 | 0.759018 |
Target: 5'- uCCGCCGCuGGCuggAGGGGCGCCc--- -3' miRNA: 3'- -GGCGGCG-CCGuggUCCUUGUGGcacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 132896 | 0.66 | 0.759018 |
Target: 5'- -aGCCG-GGCGCCGcGGGcgGCGCCGa-- -3' miRNA: 3'- ggCGGCgCCGUGGU-CCU--UGUGGCacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 56829 | 0.66 | 0.759018 |
Target: 5'- gUGCCGCGGCGgCAcGGcAAgACC-UGGu -3' miRNA: 3'- gGCGGCGCCGUgGU-CC-UUgUGGcACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 60349 | 0.66 | 0.759018 |
Target: 5'- gCGCCGCGGCcgcgcGCCAGGcAGUGCU-UGGu -3' miRNA: 3'- gGCGGCGCCG-----UGGUCC-UUGUGGcACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 68664 | 0.66 | 0.759018 |
Target: 5'- gCCGcCCGCGcCGCCGGcGucCGCCGcgUGGg -3' miRNA: 3'- -GGC-GGCGCcGUGGUC-CuuGUGGC--ACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 119877 | 0.66 | 0.759018 |
Target: 5'- aCCGCCGCaGC-CgAGGGcguguACACC-UGGc -3' miRNA: 3'- -GGCGGCGcCGuGgUCCU-----UGUGGcACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 107365 | 0.66 | 0.759018 |
Target: 5'- gUCGUCGUgGGCGCCGGG-GCGCCc--- -3' miRNA: 3'- -GGCGGCG-CCGUGGUCCuUGUGGcacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 113584 | 0.66 | 0.759018 |
Target: 5'- gCCGCCGCGcugggcgaccucGCGcCCGGGcAC-CCGcUGGc -3' miRNA: 3'- -GGCGGCGC------------CGU-GGUCCuUGuGGC-ACC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 125365 | 0.66 | 0.759018 |
Target: 5'- uCCGCCG-GGCAg-AGGGGCGCUGgaacGGg -3' miRNA: 3'- -GGCGGCgCCGUggUCCUUGUGGCa---CC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 135028 | 0.66 | 0.759018 |
Target: 5'- gCgGCCGCGGCgGCgAGGccGACGCCuGcGGc -3' miRNA: 3'- -GgCGGCGCCG-UGgUCC--UUGUGG-CaCC- -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 98296 | 0.66 | 0.759018 |
Target: 5'- gCGuCCGCGGCcUCGGGGgcggGCGCCGc-- -3' miRNA: 3'- gGC-GGCGCCGuGGUCCU----UGUGGCacc -5' |
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23793 | 5' | -59.5 | NC_005261.1 | + | 52973 | 0.66 | 0.759018 |
Target: 5'- gCCGgUGCGGCGCCggcaggcgGGGGcgGCGCCcaGGc -3' miRNA: 3'- -GGCgGCGCCGUGG--------UCCU--UGUGGcaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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