miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 111 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 1180 0.72 0.417698
Target:  5'- gCGCCGCGGCcggggccgggGCCGGGcGCGgCGcGGa -3'
miRNA:   3'- gGCGGCGCCG----------UGGUCCuUGUgGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 1232 0.67 0.702131
Target:  5'- gCCGUCGcCGGCcCCGGGAAgcccgaguCCGUGc -3'
miRNA:   3'- -GGCGGC-GCCGuGGUCCUUgu------GGCACc -5'
23793 5' -59.5 NC_005261.1 + 1307 0.68 0.692409
Target:  5'- gUCGCCgGCGGCGgCAcgcgcuccGGGACGCCGc-- -3'
miRNA:   3'- -GGCGG-CGCCGUgGU--------CCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 1409 0.72 0.461272
Target:  5'- gCCGCgGCGGCGgCGGGGGCGgCGc-- -3'
miRNA:   3'- -GGCGgCGCCGUgGUCCUUGUgGCacc -5'
23793 5' -59.5 NC_005261.1 + 1499 0.67 0.74975
Target:  5'- aCCGCCGCGGCcGgCAGcucgucGGGCGCCa--- -3'
miRNA:   3'- -GGCGGCGCCG-UgGUC------CUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 1540 0.68 0.662994
Target:  5'- gCGCCGCccGCagGCCAGGuACACCGg-- -3'
miRNA:   3'- gGCGGCGc-CG--UGGUCCuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 1720 0.68 0.68264
Target:  5'- gCGCgGCGGCAC---GGGCACCGcGGu -3'
miRNA:   3'- gGCGgCGCCGUGgucCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 1784 0.68 0.672833
Target:  5'- gCGCCGCGGCagaGCCGcagcGGcGGCGCCccgGGg -3'
miRNA:   3'- gGCGGCGCCG---UGGU----CC-UUGUGGca-CC- -5'
23793 5' -59.5 NC_005261.1 + 1873 0.66 0.771815
Target:  5'- gCGCCGCGaggccagcacggcgcGCGCCAGcGcGCGCCGc-- -3'
miRNA:   3'- gGCGGCGC---------------CGUGGUC-CuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 1917 0.68 0.662994
Target:  5'- gCCaGCgCGCGGCGCacugcgccgCGGGcAGCACCGcGGc -3'
miRNA:   3'- -GG-CG-GCGCCGUG---------GUCC-UUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 2045 0.68 0.681661
Target:  5'- gCGCCGCGGCcaGCCgcAGGcAgagguacucgaccGCGCCGcGGa -3'
miRNA:   3'- gGCGGCGCCG--UGG--UCC-U-------------UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 2235 0.67 0.721402
Target:  5'- cCCGCCGC-GCACCGGcGGcCACUcaGGc -3'
miRNA:   3'- -GGCGGCGcCGUGGUC-CUuGUGGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 2471 0.67 0.702131
Target:  5'- gCGCCG-GGCGCCAGG-GC-UCG-GGg -3'
miRNA:   3'- gGCGGCgCCGUGGUCCuUGuGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 2549 0.76 0.25872
Target:  5'- gCGCCGCGGCGCUGGGcGCggGCgUGUGGu -3'
miRNA:   3'- gGCGGCGCCGUGGUCCuUG--UG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 2604 0.77 0.230282
Target:  5'- gCCGCCGuCGGCGgCGGGGcCGCCG-GGc -3'
miRNA:   3'- -GGCGGC-GCCGUgGUCCUuGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 2793 0.71 0.479364
Target:  5'- gCUGCCGcCGGCgGCCGGGAGgGgCCG-GGc -3'
miRNA:   3'- -GGCGGC-GCCG-UGGUCCUUgU-GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 2941 0.7 0.568421
Target:  5'- aCCGCCGCGGCcgggcuccggcccggACUAGG-GC-CCG-GGc -3'
miRNA:   3'- -GGCGGCGCCG---------------UGGUCCuUGuGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 3001 0.67 0.740386
Target:  5'- gCgGCC-CGGCGCCGGG-GCucCCGcGGg -3'
miRNA:   3'- -GgCGGcGCCGUGGUCCuUGu-GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 3343 0.81 0.13489
Target:  5'- gCGCCGCGGCGCCcGGcGCGCCGg-- -3'
miRNA:   3'- gGCGGCGCCGUGGuCCuUGUGGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.