miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 3375 0.68 0.653132
Target:  5'- gCCGCgagCGCGGcCGCCAGccGCGCCGg-- -3'
miRNA:   3'- -GGCG---GCGCC-GUGGUCcuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 3484 0.66 0.786159
Target:  5'- gCGCCaGCGGgGCCAcGGuucGCGCCGc-- -3'
miRNA:   3'- gGCGG-CGCCgUGGU-CCu--UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 3685 0.74 0.361112
Target:  5'- -gGCCGCGGCccgcugcaGCCGaGAGCACCG-GGa -3'
miRNA:   3'- ggCGGCGCCG--------UGGUcCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 3825 0.67 0.710834
Target:  5'- gCUGCCGCgGGC-CCGGGcgcuggcggcagcGGCGCCGg-- -3'
miRNA:   3'- -GGCGGCG-CCGuGGUCC-------------UUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 3918 0.68 0.691435
Target:  5'- gCGCCGcCGGCGCCggccuccGGGuAgGCCaUGGg -3'
miRNA:   3'- gGCGGC-GCCGUGG-------UCCuUgUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 4147 0.68 0.643255
Target:  5'- gCGCCGCuGCAgCAGGcGCGCCa--- -3'
miRNA:   3'- gGCGGCGcCGUgGUCCuUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 4217 0.67 0.711798
Target:  5'- gCGUCGCGGCgcgcguacACCAGGucCACCa--- -3'
miRNA:   3'- gGCGGCGCCG--------UGGUCCuuGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 4415 0.66 0.759018
Target:  5'- gCGCUGCcGgGCCAGGccuCGCCGgagGGc -3'
miRNA:   3'- gGCGGCGcCgUGGUCCuu-GUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 4531 0.71 0.497796
Target:  5'- gCGCCGCGGCG--AGGG-CGCCG-GGc -3'
miRNA:   3'- gGCGGCGCCGUggUCCUuGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 4664 0.67 0.74975
Target:  5'- uCgGCCGCGGCGgCGGcGGCccCCGUGu -3'
miRNA:   3'- -GgCGGCGCCGUgGUCcUUGu-GGCACc -5'
23793 5' -59.5 NC_005261.1 + 4947 0.75 0.317028
Target:  5'- gCGCCGCGGC-CCAGGcGCccccgGCCGcGGc -3'
miRNA:   3'- gGCGGCGCCGuGGUCCuUG-----UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 5478 0.68 0.662994
Target:  5'- cCCGCuauCGCGcGCGCCGGGGGguaGCUG-GGg -3'
miRNA:   3'- -GGCG---GCGC-CGUGGUCCUUg--UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 5562 0.69 0.613602
Target:  5'- gCGCCcgaGCGGCGgagaUGGGGGCGCCGaGGg -3'
miRNA:   3'- gGCGG---CGCCGUg---GUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 6214 0.67 0.730934
Target:  5'- cCCGCCcagaccugGCGGU-CCAGGuGCGCCcggGGa -3'
miRNA:   3'- -GGCGG--------CGCCGuGGUCCuUGUGGca-CC- -5'
23793 5' -59.5 NC_005261.1 + 7900 0.66 0.759018
Target:  5'- uCCGgCGCGGCGCCAccaGAugGCGCC-UGa -3'
miRNA:   3'- -GGCgGCGCCGUGGUc--CU--UGUGGcACc -5'
23793 5' -59.5 NC_005261.1 + 8829 0.77 0.224921
Target:  5'- cCCGCCG-GGCAagggggCGGGGACagGCCGUGGg -3'
miRNA:   3'- -GGCGGCgCCGUg-----GUCCUUG--UGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 9334 0.76 0.247014
Target:  5'- gCCGCCGaCGaGCccACCGGGAGCACCGc-- -3'
miRNA:   3'- -GGCGGC-GC-CG--UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 11921 0.68 0.653132
Target:  5'- cCCgGCCgGCGGCugCGGcGGcccGCGCCGcGGc -3'
miRNA:   3'- -GG-CGG-CGCCGugGUC-CU---UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 12140 0.66 0.794085
Target:  5'- gCCGCCGCGGCggccgcgcagGCCccaagccccgcacAGGccAGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCG----------UGG-------------UCC--UUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 12299 0.68 0.653132
Target:  5'- uCCGCCGCgGGCA-CGGGcGCguaGCCGgcgGGc -3'
miRNA:   3'- -GGCGGCG-CCGUgGUCCuUG---UGGCa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.