miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 12353 0.67 0.740386
Target:  5'- gCCGCCGCGGCGgCAaccGGcGCGucuUCGaUGGu -3'
miRNA:   3'- -GGCGGCGCCGUgGU---CCuUGU---GGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 13665 0.74 0.338549
Target:  5'- gCCGCCGCggggggGGCGCgGGGcGCGCgggCGUGGg -3'
miRNA:   3'- -GGCGGCG------CCGUGgUCCuUGUG---GCACC- -5'
23793 5' -59.5 NC_005261.1 + 14362 0.73 0.392787
Target:  5'- -aGCCGCGGC-CgGGGcGGCGCgGUGGc -3'
miRNA:   3'- ggCGGCGCCGuGgUCC-UUGUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 14816 0.7 0.535559
Target:  5'- aCGuCCGCGGCuuauagaugcGCCGGGAGCACgGc-- -3'
miRNA:   3'- gGC-GGCGCCG----------UGGUCCUUGUGgCacc -5'
23793 5' -59.5 NC_005261.1 + 14917 0.71 0.470274
Target:  5'- aCGCacaGgGGCACCAGGAucgACGCCaGcUGGc -3'
miRNA:   3'- gGCGg--CgCCGUGGUCCU---UGUGG-C-ACC- -5'
23793 5' -59.5 NC_005261.1 + 14985 0.66 0.768181
Target:  5'- gCgGCCGCGccggccGCGCCcGGAGCGCgGgaGGa -3'
miRNA:   3'- -GgCGGCGC------CGUGGuCCUUGUGgCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 15177 0.69 0.633369
Target:  5'- gCgGCgGCGGCGCCcgcGGGAaACGCCGc-- -3'
miRNA:   3'- -GgCGgCGCCGUGG---UCCU-UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 15267 0.69 0.603735
Target:  5'- aUCGCCccgGCGGCGCCGccGGGGCGCgCGg-- -3'
miRNA:   3'- -GGCGG---CGCCGUGGU--CCUUGUG-GCacc -5'
23793 5' -59.5 NC_005261.1 + 15935 0.67 0.740386
Target:  5'- -gGCCGgGGCccgggcaggaGCCGGGGGCGa-GUGGc -3'
miRNA:   3'- ggCGGCgCCG----------UGGUCCUUGUggCACC- -5'
23793 5' -59.5 NC_005261.1 + 16094 0.67 0.708904
Target:  5'- aCGCgGCGGCACCGGcGGcggccacgcacgcgAuCACCGcGGc -3'
miRNA:   3'- gGCGgCGCCGUGGUC-CU--------------U-GUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 16263 0.76 0.24644
Target:  5'- gCCGCCGgGGCcgggcuucggcucGCCcggGGGGGCGCCGUcGGg -3'
miRNA:   3'- -GGCGGCgCCG-------------UGG---UCCUUGUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 17125 0.68 0.643255
Target:  5'- --aUCGCGGCGgCGGGuACGCCGgcgGGu -3'
miRNA:   3'- ggcGGCGCCGUgGUCCuUGUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 19535 0.69 0.623483
Target:  5'- aCgGcCCGCGuCACCGccAGCGCCGUGGg -3'
miRNA:   3'- -GgC-GGCGCcGUGGUccUUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 20245 0.72 0.43483
Target:  5'- uCCGCCGCGcGCuCCAuGGGCGCCGa-- -3'
miRNA:   3'- -GGCGGCGC-CGuGGUcCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 20498 0.66 0.786159
Target:  5'- gCGCUGacagcgGGCcgGCUAGGGACGCCGg-- -3'
miRNA:   3'- gGCGGCg-----CCG--UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 20571 0.7 0.564525
Target:  5'- gCGCaGCGGCGCCGGcGGCGCgGgUGGc -3'
miRNA:   3'- gGCGgCGCCGUGGUCcUUGUGgC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 20659 0.7 0.545161
Target:  5'- aCCGCCgGUGGCGgCAGcGGCAgaGUGGa -3'
miRNA:   3'- -GGCGG-CGCCGUgGUCcUUGUggCACC- -5'
23793 5' -59.5 NC_005261.1 + 21747 0.68 0.68264
Target:  5'- gCgGCUGCuGCGCCuGGAGCGCgCGccGGg -3'
miRNA:   3'- -GgCGGCGcCGUGGuCCUUGUG-GCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 21780 0.71 0.470274
Target:  5'- gCCGCCGCGGCGC--GGGcCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCGUGguCCUuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 22071 0.68 0.672833
Target:  5'- uCCGgCGgGGCucgaGGGGGCGCCGcgUGGg -3'
miRNA:   3'- -GGCgGCgCCGugg-UCCUUGUGGC--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.