miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 22655 0.68 0.692409
Target:  5'- gCGCUgGCGGCGCCuGGGcgGCGCCcgaGUGc -3'
miRNA:   3'- gGCGG-CGCCGUGGuCCU--UGUGG---CACc -5'
23793 5' -59.5 NC_005261.1 + 22829 0.68 0.692409
Target:  5'- gCCGCCGuUGGCGCCGGGcucggggaagAACACguCGUc- -3'
miRNA:   3'- -GGCGGC-GCCGUGGUCC----------UUGUG--GCAcc -5'
23793 5' -59.5 NC_005261.1 + 23473 0.66 0.759018
Target:  5'- cCCGCgGCGGCgaguGCgCGGGccCGCC-UGGg -3'
miRNA:   3'- -GGCGgCGCCG----UG-GUCCuuGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 23557 0.67 0.740386
Target:  5'- gCCGUCGCaGGUggGgCAGGGcugGCCGUGGc -3'
miRNA:   3'- -GGCGGCG-CCG--UgGUCCUug-UGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 23612 0.68 0.662994
Target:  5'- gUCGCCGCcGCugCcGGGGCGCgGcGGg -3'
miRNA:   3'- -GGCGGCGcCGugGuCCUUGUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 24539 0.68 0.657079
Target:  5'- cCCGCCcacguaccuggccggGCGGCGCCAGGucccAGC-CCGa-- -3'
miRNA:   3'- -GGCGG---------------CGCCGUGGUCC----UUGuGGCacc -5'
23793 5' -59.5 NC_005261.1 + 24655 0.7 0.526016
Target:  5'- uCCGCaCGUGGUAUacccaGGGGAUGCCG-GGa -3'
miRNA:   3'- -GGCG-GCGCCGUGg----UCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 27648 0.68 0.643255
Target:  5'- gCCGCCGuCGGgACgAGGGGCcCCuuUGGg -3'
miRNA:   3'- -GGCGGC-GCCgUGgUCCUUGuGGc-ACC- -5'
23793 5' -59.5 NC_005261.1 + 28559 0.67 0.740386
Target:  5'- cUCGaCGCGGCccGCCGGGccgaggcgcgcgAGCGCCGgcgGGc -3'
miRNA:   3'- -GGCgGCGCCG--UGGUCC------------UUGUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 28758 0.78 0.209471
Target:  5'- aCGCCGCGGC--CGGGGGCGCC-UGGg -3'
miRNA:   3'- gGCGGCGCCGugGUCCUUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 28891 0.69 0.623483
Target:  5'- gCCGCCGCcuGCGCCcaacgcggAGGAaguugACGCCG-GGc -3'
miRNA:   3'- -GGCGGCGc-CGUGG--------UCCU-----UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 29059 0.7 0.535559
Target:  5'- gCCGCCGCGGCcgacACUggauuuAGGGACucggggGCCG-GGg -3'
miRNA:   3'- -GGCGGCGCCG----UGG------UCCUUG------UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 29114 0.66 0.768181
Target:  5'- aCGCCGaggggagcccUGGCGCCgGGGGGCGCCccgccGGa -3'
miRNA:   3'- gGCGGC----------GCCGUGG-UCCUUGUGGca---CC- -5'
23793 5' -59.5 NC_005261.1 + 29193 0.74 0.353476
Target:  5'- cUCGCCGCGGCGCCcgcGcGGGCGCgCGacUGGg -3'
miRNA:   3'- -GGCGGCGCCGUGGu--C-CUUGUG-GC--ACC- -5'
23793 5' -59.5 NC_005261.1 + 29240 0.77 0.224921
Target:  5'- aCGCCGCGGCGCCGcgcgacGGGcCGCCGccgcUGGa -3'
miRNA:   3'- gGCGGCGCCGUGGU------CCUuGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 29407 0.67 0.730934
Target:  5'- gCCGCgcgcuaCGCGGCgGCCGcGGGGCccgcgGCCGUGu -3'
miRNA:   3'- -GGCG------GCGCCG-UGGU-CCUUG-----UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 29638 0.7 0.554819
Target:  5'- gCGCCGCuGcCGCCggucGGGGACGCCaUGGc -3'
miRNA:   3'- gGCGGCGcC-GUGG----UCCUUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 29953 0.68 0.68264
Target:  5'- cCUGCCGCgaGGCGCUAGaGGcgGCGCgGUGc -3'
miRNA:   3'- -GGCGGCG--CCGUGGUC-CU--UGUGgCACc -5'
23793 5' -59.5 NC_005261.1 + 30174 0.7 0.554819
Target:  5'- cCCGCCGCGcugcGCGCCgAGGcggcCGCCGcgcUGGa -3'
miRNA:   3'- -GGCGGCGC----CGUGG-UCCuu--GUGGC---ACC- -5'
23793 5' -59.5 NC_005261.1 + 30382 0.71 0.487618
Target:  5'- gCGCCGCGGCGCgGguggagguggaGGAcaugcgggccgggGCACCGcGGg -3'
miRNA:   3'- gGCGGCGCCGUGgU-----------CCU-------------UGUGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.