miRNA display CGI


Results 81 - 100 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 30979 0.76 0.275236
Target:  5'- cCCGCCGCGGCgcaagcgcaagucgGCCGGGGccaggggcccgGCGCCGg-- -3'
miRNA:   3'- -GGCGGCGCCG--------------UGGUCCU-----------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 31134 0.67 0.711798
Target:  5'- uCCGCCGCGuGCcgcCCGGGGAgUACCa--- -3'
miRNA:   3'- -GGCGGCGC-CGu--GGUCCUU-GUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 31176 0.67 0.702131
Target:  5'- gCGCCGCGGCGCUGGcGGccuacugccGCcCCGaGGu -3'
miRNA:   3'- gGCGGCGCCGUGGUC-CU---------UGuGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 31302 0.66 0.768181
Target:  5'- cCCGCCGCcGCGC--GGGGC-CCGcGGg -3'
miRNA:   3'- -GGCGGCGcCGUGguCCUUGuGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 31436 0.68 0.662994
Target:  5'- gCGCUgGCGGCGCCgcccggcgAGGAcgaGCGCCGgcGGc -3'
miRNA:   3'- gGCGG-CGCCGUGG--------UCCU---UGUGGCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 31510 0.68 0.672833
Target:  5'- cCUGCuCGCGGCGCUGGGca-ACCGg-- -3'
miRNA:   3'- -GGCG-GCGCCGUGGUCCuugUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 31681 0.77 0.221756
Target:  5'- -gGCCGCGGCGCgGcGGcggcugaucgugaucGACGCCGUGGa -3'
miRNA:   3'- ggCGGCGCCGUGgU-CC---------------UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 31898 0.68 0.643255
Target:  5'- gCCGCuuacgCGCGGCucuacCCcGGGGCGCCGccgcUGGg -3'
miRNA:   3'- -GGCG-----GCGCCGu----GGuCCUUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 31940 0.76 0.26474
Target:  5'- uCUGCCGCGGCGCCAacgugcgcuACACgGUGGc -3'
miRNA:   3'- -GGCGGCGCCGUGGUccu------UGUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 32007 0.66 0.777231
Target:  5'- gCCGCCGCGcgaGUACCGGcAGCG-CGUGc -3'
miRNA:   3'- -GGCGGCGC---CGUGGUCcUUGUgGCACc -5'
23793 5' -59.5 NC_005261.1 + 32160 0.66 0.768181
Target:  5'- gCCGCUGCGGCcgguguaccugGCCugcGGGcGGCGCgCGcUGGa -3'
miRNA:   3'- -GGCGGCGCCG-----------UGG---UCC-UUGUG-GC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 32280 0.68 0.692409
Target:  5'- gCCGCCGCuGGUGCUggaGGcGGGCGCCGc-- -3'
miRNA:   3'- -GGCGGCG-CCGUGG---UC-CUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 32323 0.74 0.361112
Target:  5'- gCgGCCGCGGCGCCcGGcGugGCC-UGGg -3'
miRNA:   3'- -GgCGGCGCCGUGGuCC-UugUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 32415 0.75 0.310087
Target:  5'- gCCGCCGcCGGCGaCGGGAGCcccGCCGgccUGGg -3'
miRNA:   3'- -GGCGGC-GCCGUgGUCCUUG---UGGC---ACC- -5'
23793 5' -59.5 NC_005261.1 + 32543 0.76 0.270874
Target:  5'- cCCgGCCGCGGCG-CGGGccGGCGCgCGUGGa -3'
miRNA:   3'- -GG-CGGCGCCGUgGUCC--UUGUG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 33042 0.75 0.317028
Target:  5'- gCGuCCGCGGaggGCCAGGAcucgGCGCCG-GGg -3'
miRNA:   3'- gGC-GGCGCCg--UGGUCCU----UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 33304 0.75 0.289961
Target:  5'- cCCGUCGCGGgACCAGGAcCGCUGc-- -3'
miRNA:   3'- -GGCGGCGCCgUGGUCCUuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 33351 0.7 0.554819
Target:  5'- aCCGCCGCcaccGcCGCCGGGccGCGCCG-GGc -3'
miRNA:   3'- -GGCGGCGc---C-GUGGUCCu-UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 33469 0.66 0.794959
Target:  5'- gCCGCCGCcGCAgCCGGGccCGCuCGcGGn -3'
miRNA:   3'- -GGCGGCGcCGU-GGUCCuuGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 33498 0.74 0.353476
Target:  5'- -gGcCCGCGaGCACCAGGGgcggcggcgGCACCGcUGGc -3'
miRNA:   3'- ggC-GGCGC-CGUGGUCCU---------UGUGGC-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.