miRNA display CGI


Results 101 - 120 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 33534 0.71 0.497796
Target:  5'- gCC-CCGgGaGCACCAGGGGCGCCa--- -3'
miRNA:   3'- -GGcGGCgC-CGUGGUCCUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 33585 0.77 0.241328
Target:  5'- gCC-CCGCGaGCACCAGGGgcgGCGCCGgcgcGGg -3'
miRNA:   3'- -GGcGGCGC-CGUGGUCCU---UGUGGCa---CC- -5'
23793 5' -59.5 NC_005261.1 + 33736 0.67 0.702131
Target:  5'- cCUGCCccucgcGCGGCGCCGGG---GCCG-GGn -3'
miRNA:   3'- -GGCGG------CGCCGUGGUCCuugUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 33765 0.7 0.574276
Target:  5'- cCCGCuCGCGGgGCCcgcGGcGAGCGCUG-GGc -3'
miRNA:   3'- -GGCG-GCGCCgUGG---UC-CUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 34085 0.66 0.759018
Target:  5'- uCCGCCGCuGGCuggAGGGGCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGuggUCCUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 34291 0.71 0.488539
Target:  5'- gCCGgCGgGGaCGCCGGGAGCgagACCGacgGGg -3'
miRNA:   3'- -GGCgGCgCC-GUGGUCCUUG---UGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 34453 0.73 0.3847
Target:  5'- gCGCCGgGGCacggGCCGGGGGCcCCGUa- -3'
miRNA:   3'- gGCGGCgCCG----UGGUCCUUGuGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 35490 0.69 0.593887
Target:  5'- cCUGCCGCGGCACCcgcccuuGCcCCGcUGGc -3'
miRNA:   3'- -GGCGGCGCCGUGGuccu---UGuGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 35688 0.7 0.526016
Target:  5'- cCCGCCGgcgagcccCGGUggGCCGGGGGCuCgGUGGc -3'
miRNA:   3'- -GGCGGC--------GCCG--UGGUCCUUGuGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 35907 0.72 0.426213
Target:  5'- cCCGCCGCGGCAgCGcGGccccGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCGUgGU-CCu---UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 36586 0.78 0.19683
Target:  5'- cCCGCCGCGGcCACCGGGGgggggcagcgcuccuGCGCCccGGc -3'
miRNA:   3'- -GGCGGCGCC-GUGGUCCU---------------UGUGGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 37131 0.67 0.711798
Target:  5'- gCCgGCCGUGGCACCGaguGGcauGGCACCa--- -3'
miRNA:   3'- -GG-CGGCGCCGUGGU---CC---UUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 37237 0.67 0.702131
Target:  5'- gCGgCGCGGCGCguGG-ACAgCGcGGa -3'
miRNA:   3'- gGCgGCGCCGUGguCCuUGUgGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 37355 0.67 0.74975
Target:  5'- uCCGCgGgCGGUGCUcgccgcccgAGGcGGCGCUGUGGu -3'
miRNA:   3'- -GGCGgC-GCCGUGG---------UCC-UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 37430 0.75 0.296554
Target:  5'- aCGCCGUGGCGCgCGGGcuCGCCGa-- -3'
miRNA:   3'- gGCGGCGCCGUG-GUCCuuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 38199 0.67 0.715648
Target:  5'- gCGCCGCGGCgugcugcugcucaacACCucGcuCACCGUGcGg -3'
miRNA:   3'- gGCGGCGCCG---------------UGGucCuuGUGGCAC-C- -5'
23793 5' -59.5 NC_005261.1 + 38489 0.66 0.803621
Target:  5'- gCCGCgGCGGCGUCGacuGGAGCGUCGUa- -3'
miRNA:   3'- -GGCGgCGCCGUGGU---CCUUGUGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 38531 0.71 0.488539
Target:  5'- -gGCUGCGcGCGCCGGGcacAGCGCCGg-- -3'
miRNA:   3'- ggCGGCGC-CGUGGUCC---UUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 39465 0.69 0.593887
Target:  5'- gCGgCGCGGCGCCccaacGGGccCGCCGcGGa -3'
miRNA:   3'- gGCgGCGCCGUGG-----UCCuuGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 39804 0.72 0.452363
Target:  5'- gCgGCCGcCGGCGCCAGGcucuggccguACACgGUGa -3'
miRNA:   3'- -GgCGGC-GCCGUGGUCCu---------UGUGgCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.