miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 137794 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 136626 0.7 0.554819
Target:  5'- gCGCCGagGGCGgCGGGAAgGCC-UGGu -3'
miRNA:   3'- gGCGGCg-CCGUgGUCCUUgUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 135443 0.68 0.672833
Target:  5'- gCCGCCcagGCGGCG-CGGGcGCugCG-GGa -3'
miRNA:   3'- -GGCGG---CGCCGUgGUCCuUGugGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 135369 0.68 0.653132
Target:  5'- gCCGCCGCGuCACCuGGGAgACGCUcaUGGu -3'
miRNA:   3'- -GGCGGCGCcGUGG-UCCU-UGUGGc-ACC- -5'
23793 5' -59.5 NC_005261.1 + 135028 0.66 0.759018
Target:  5'- gCgGCCGCGGCgGCgAGGccGACGCCuGcGGc -3'
miRNA:   3'- -GgCGGCGCCG-UGgUCC--UUGUGG-CaCC- -5'
23793 5' -59.5 NC_005261.1 + 134993 0.7 0.535559
Target:  5'- gCCGCCGgGGCGCCccuGGcGCGgCG-GGc -3'
miRNA:   3'- -GGCGGCgCCGUGGu--CCuUGUgGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 134571 0.7 0.578188
Target:  5'- gCGCCGCGGCugCGcagggcGGGccuggcgagcauaaaGCGCCG-GGu -3'
miRNA:   3'- gGCGGCGCCGugGU------CCU---------------UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 134358 0.74 0.353476
Target:  5'- gCGCCGCcGCGCgGGGGgcgGCGCCGcUGGc -3'
miRNA:   3'- gGCGGCGcCGUGgUCCU---UGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 133508 0.72 0.443548
Target:  5'- aCCGCCuCGGgACCGuGuuCACCGUGGa -3'
miRNA:   3'- -GGCGGcGCCgUGGUcCuuGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 133257 0.68 0.643255
Target:  5'- cCCGCagGCGGCgcgcgaguACCAGG-GCGCCGg-- -3'
miRNA:   3'- -GGCGg-CGCCG--------UGGUCCuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 133174 0.69 0.602749
Target:  5'- gCCGCCgacaaccGCGGCGCCgucgAGGAguucaucgccgACGCCGUcgaGGc -3'
miRNA:   3'- -GGCGG-------CGCCGUGG----UCCU-----------UGUGGCA---CC- -5'
23793 5' -59.5 NC_005261.1 + 132896 0.66 0.759018
Target:  5'- -aGCCG-GGCGCCGcGGGcgGCGCCGa-- -3'
miRNA:   3'- ggCGGCgCCGUGGU-CCU--UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 132600 0.68 0.691435
Target:  5'- aCGCC-CGGCccggcgagccGCCAGGGggcgcugGCGCCGaGGa -3'
miRNA:   3'- gGCGGcGCCG----------UGGUCCU-------UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 132360 0.66 0.768181
Target:  5'- uCCGCCGCGGCGCgCucgccGCGCuCGcGGc -3'
miRNA:   3'- -GGCGGCGCCGUG-Guccu-UGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 132162 0.71 0.470274
Target:  5'- gCGCCGCcGCugCAGGcAGCGCgGgcgGGg -3'
miRNA:   3'- gGCGGCGcCGugGUCC-UUGUGgCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 132092 0.68 0.653132
Target:  5'- gCUGCCGCGGagggcgGCCGcGAcGCGCuCGUGGa -3'
miRNA:   3'- -GGCGGCGCCg-----UGGUcCU-UGUG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 131759 0.73 0.400983
Target:  5'- aCGCCGgcCGGCGCggCGGGcGCGCCGcUGGg -3'
miRNA:   3'- gGCGGC--GCCGUG--GUCCuUGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 131634 0.7 0.545161
Target:  5'- cCCGCCGCgaggaccgacgGGCcccCCGGGcGCACCGUc- -3'
miRNA:   3'- -GGCGGCG-----------CCGu--GGUCCuUGUGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 130316 0.68 0.662994
Target:  5'- gCCGCUGCaGCGCCAuGGAcggcccggccGCGCuCG-GGg -3'
miRNA:   3'- -GGCGGCGcCGUGGU-CCU----------UGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 129654 0.71 0.470274
Target:  5'- gCgGCgGCGGCGgCAGGGGCgggACCGgGGg -3'
miRNA:   3'- -GgCGgCGCCGUgGUCCUUG---UGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.