miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 129584 0.66 0.777231
Target:  5'- gCgGCCGC-GCGCCGcGGGACACgCGg-- -3'
miRNA:   3'- -GgCGGCGcCGUGGU-CCUUGUG-GCacc -5'
23793 5' -59.5 NC_005261.1 + 129365 0.66 0.803621
Target:  5'- uCCGCgcgcgggucgCGCGGCuuCGGGucCACCG-GGc -3'
miRNA:   3'- -GGCG----------GCGCCGugGUCCuuGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 127856 0.76 0.256935
Target:  5'- gCgGUCGCGGCGCCAGGGcacgagcgggagucGCGCCGg-- -3'
miRNA:   3'- -GgCGGCGCCGUGGUCCU--------------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 127806 0.7 0.554819
Target:  5'- gCGCCGCGGCGgCGGGccgcucGCGCuCGcGGc -3'
miRNA:   3'- gGCGGCGCCGUgGUCCu-----UGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 127692 0.75 0.296554
Target:  5'- gCUGCCccgGCGGCGCCggAGGAGCuGCgCGUGGc -3'
miRNA:   3'- -GGCGG---CGCCGUGG--UCCUUG-UG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 127641 0.73 0.3847
Target:  5'- aCgGCgGCGGCGCCGGGGggcGCGCgGguucgGGg -3'
miRNA:   3'- -GgCGgCGCCGUGGUCCU---UGUGgCa----CC- -5'
23793 5' -59.5 NC_005261.1 + 127564 0.67 0.739445
Target:  5'- aCGCgUGCGucggcccGCACCAGGG-CGCCcUGGg -3'
miRNA:   3'- gGCG-GCGC-------CGUGGUCCUuGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 127328 0.66 0.777231
Target:  5'- gCCGcCCGCgGGgGCC-GGAGCGgCG-GGg -3'
miRNA:   3'- -GGC-GGCG-CCgUGGuCCUUGUgGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 127283 0.66 0.776331
Target:  5'- cCCGCCGCGGgggcagcccucccCGCCGGcug-GCgGUGGg -3'
miRNA:   3'- -GGCGGCGCC-------------GUGGUCcuugUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 127079 0.66 0.792333
Target:  5'- gCCGCCGCcGCGCCGccgcaaugacggcuGG-GCGCgGUGa -3'
miRNA:   3'- -GGCGGCGcCGUGGU--------------CCuUGUGgCACc -5'
23793 5' -59.5 NC_005261.1 + 126928 0.68 0.68264
Target:  5'- uCCGUuccaGCaGCgcgGCCAGGGGCGCCG-GGc -3'
miRNA:   3'- -GGCGg---CGcCG---UGGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 126259 0.69 0.633369
Target:  5'- uCCGCCGCGuccaagaaGCcguccuCCAGcGccacGACGCCGUGGu -3'
miRNA:   3'- -GGCGGCGC--------CGu-----GGUC-C----UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 126056 0.66 0.794959
Target:  5'- cCCGCUcCGGCGCCAGccgccCGCCGg-- -3'
miRNA:   3'- -GGCGGcGCCGUGGUCcuu--GUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 125791 0.66 0.786159
Target:  5'- gCCGCUGCgaacggGGCuuggGCCGGGGcCGCCGcgagcgGGg -3'
miRNA:   3'- -GGCGGCG------CCG----UGGUCCUuGUGGCa-----CC- -5'
23793 5' -59.5 NC_005261.1 + 125717 0.72 0.43483
Target:  5'- gCCGCCGCgGGCucgGCUGGGGcCGCCGcaagGGg -3'
miRNA:   3'- -GGCGGCG-CCG---UGGUCCUuGUGGCa---CC- -5'
23793 5' -59.5 NC_005261.1 + 125537 0.7 0.564525
Target:  5'- gCCGCCcgcaggGCGGCGCCAGaGGccuuACGCCagagGGa -3'
miRNA:   3'- -GGCGG------CGCCGUGGUC-CU----UGUGGca--CC- -5'
23793 5' -59.5 NC_005261.1 + 125365 0.66 0.759018
Target:  5'- uCCGCCG-GGCAg-AGGGGCGCUGgaacGGg -3'
miRNA:   3'- -GGCGGCgCCGUggUCCUUGUGGCa---CC- -5'
23793 5' -59.5 NC_005261.1 + 124936 0.68 0.643255
Target:  5'- uCCGCCGCGcGCGCUGuGccGGCGCCcUGGa -3'
miRNA:   3'- -GGCGGCGC-CGUGGUcC--UUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 124243 0.67 0.702131
Target:  5'- gCCGCCGCgggcaGGCGCCGcGcGGCGCCGc-- -3'
miRNA:   3'- -GGCGGCG-----CCGUGGU-CcUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 124093 0.66 0.786159
Target:  5'- cCCGCguaGCGcGCGCaCAGGGccgGCACCGc-- -3'
miRNA:   3'- -GGCGg--CGC-CGUG-GUCCU---UGUGGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.