miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 123636 0.67 0.701161
Target:  5'- gCCGCUGCGcgaucagccccacGC-CCAGGAAgGCCGcUGu -3'
miRNA:   3'- -GGCGGCGC-------------CGuGGUCCUUgUGGC-ACc -5'
23793 5' -59.5 NC_005261.1 + 123463 0.83 0.101426
Target:  5'- gCCGUCGCGGgccucccagaacucCACCAGGGACACCG-GGc -3'
miRNA:   3'- -GGCGGCGCC--------------GUGGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 123230 0.66 0.771815
Target:  5'- gCCGCCuaGCGGCcgcCCAGGcGCGggccccgcccaucgcCCGUGa -3'
miRNA:   3'- -GGCGG--CGCCGu--GGUCCuUGU---------------GGCACc -5'
23793 5' -59.5 NC_005261.1 + 122703 0.71 0.507131
Target:  5'- aUCGCCGCGcCGCCGGccGCGCCGUc- -3'
miRNA:   3'- -GGCGGCGCcGUGGUCcuUGUGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 121832 0.72 0.452363
Target:  5'- gCCGCCGCGGCggcgcaccggcGCCAGcAGC-CCGcGGc -3'
miRNA:   3'- -GGCGGCGCCG-----------UGGUCcUUGuGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 121784 0.67 0.730934
Target:  5'- -gGCCGCGGCcggcgggcuggGCaGGGGGCG-CGUGGc -3'
miRNA:   3'- ggCGGCGCCG-----------UGgUCCUUGUgGCACC- -5'
23793 5' -59.5 NC_005261.1 + 121628 0.66 0.785272
Target:  5'- cCCGCCGCucGGCggccgccGCCGGcGAGCGCgGg-- -3'
miRNA:   3'- -GGCGGCG--CCG-------UGGUC-CUUGUGgCacc -5'
23793 5' -59.5 NC_005261.1 + 121209 0.67 0.711798
Target:  5'- -gGCCGCGG-GCCGGaGAcugcaGCACCGcaUGGc -3'
miRNA:   3'- ggCGGCGCCgUGGUC-CU-----UGUGGC--ACC- -5'
23793 5' -59.5 NC_005261.1 + 120647 0.66 0.794959
Target:  5'- gUGCCuGCGGCGCaaggcgCGGGcGCGCCuGUGa -3'
miRNA:   3'- gGCGG-CGCCGUG------GUCCuUGUGG-CACc -5'
23793 5' -59.5 NC_005261.1 + 120589 0.71 0.479364
Target:  5'- gCGUCGUGGCcgucGCCugcGGccucGGCGCCGUGGg -3'
miRNA:   3'- gGCGGCGCCG----UGGu--CC----UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 120249 0.67 0.730934
Target:  5'- uUCGCCGCGGCugCc---ACGCCGg-- -3'
miRNA:   3'- -GGCGGCGCCGugGuccuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 120044 0.66 0.777231
Target:  5'- cCCGCCGCGcuccacGCGCCugcgcuGGuuccGCAacggcuaccCCGUGGa -3'
miRNA:   3'- -GGCGGCGC------CGUGGu-----CCu---UGU---------GGCACC- -5'
23793 5' -59.5 NC_005261.1 + 119877 0.66 0.759018
Target:  5'- aCCGCCGCaGC-CgAGGGcguguACACC-UGGc -3'
miRNA:   3'- -GGCGGCGcCGuGgUCCU-----UGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 119553 0.75 0.292584
Target:  5'- cCCGCCGCGGgGCCGcaaguGGAugcgcugcgagcgcgAgACCGUGGc -3'
miRNA:   3'- -GGCGGCGCCgUGGU-----CCU---------------UgUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 119215 0.67 0.740386
Target:  5'- cCCGCCaUGGCccuGCCGGGGcgAgCGUGGc -3'
miRNA:   3'- -GGCGGcGCCG---UGGUCCUugUgGCACC- -5'
23793 5' -59.5 NC_005261.1 + 118926 0.7 0.564525
Target:  5'- gCCGCgggCGCGGCGCCGcgcGGcuggccgcGGCGCaCGUGGc -3'
miRNA:   3'- -GGCG---GCGCCGUGGU---CC--------UUGUG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 118632 0.72 0.461272
Target:  5'- gCCGCCGCGGCGgcgcucugggccCCGGGccgcGCGCuCG-GGg -3'
miRNA:   3'- -GGCGGCGCCGU------------GGUCCu---UGUG-GCaCC- -5'
23793 5' -59.5 NC_005261.1 + 118546 0.72 0.426213
Target:  5'- cCUGCgGCGcGCGCgAGGA-CGCCGUGc -3'
miRNA:   3'- -GGCGgCGC-CGUGgUCCUuGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 118446 0.73 0.3847
Target:  5'- gCCGCCGCGGCGCUAGaaGACACUu--- -3'
miRNA:   3'- -GGCGGCGCCGUGGUCc-UUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 118293 0.81 0.122018
Target:  5'- gCCGCCGCgGGCACCGGGGcgcacuuccGCACCGcgcugcUGGc -3'
miRNA:   3'- -GGCGGCG-CCGUGGUCCU---------UGUGGC------ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.