miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 118164 0.66 0.777231
Target:  5'- gCCGUCGCGGCG--GGGcuUGCCGUcuGGg -3'
miRNA:   3'- -GGCGGCGCCGUggUCCuuGUGGCA--CC- -5'
23793 5' -59.5 NC_005261.1 + 118002 0.67 0.711798
Target:  5'- aCgGCgGCGGCGCU--GGACGCUGUcGGa -3'
miRNA:   3'- -GgCGgCGCCGUGGucCUUGUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 117536 0.76 0.247014
Target:  5'- uCCaCCGCGGCGCCggAGGGGCugACCGUGu -3'
miRNA:   3'- -GGcGGCGCCGUGG--UCCUUG--UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 116925 0.68 0.643255
Target:  5'- gCCGCCGCgGGCugCuGG-ACGCCu--- -3'
miRNA:   3'- -GGCGGCG-CCGugGuCCuUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 116661 0.67 0.711798
Target:  5'- gCCGCCgaccugcuccGCGGCGCCGGcccaaucgcGAGCGCCu--- -3'
miRNA:   3'- -GGCGG----------CGCCGUGGUC---------CUUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 116517 0.72 0.443548
Target:  5'- gCCGCgGCGGCGCgAGGccCGCCGc-- -3'
miRNA:   3'- -GGCGgCGCCGUGgUCCuuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 116371 0.66 0.803621
Target:  5'- gCCGCCGCGcGCaauGCCGaucGGGGgGCCGc-- -3'
miRNA:   3'- -GGCGGCGC-CG---UGGU---CCUUgUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 116022 0.69 0.613602
Target:  5'- gCCGCCGaCGGCGCgCAuGGucuGCGCCacgaUGGc -3'
miRNA:   3'- -GGCGGC-GCCGUG-GU-CCu--UGUGGc---ACC- -5'
23793 5' -59.5 NC_005261.1 + 114999 0.68 0.662994
Target:  5'- gCCGCCGCGGCcCCGGc--C-CCGcGGa -3'
miRNA:   3'- -GGCGGCGCCGuGGUCcuuGuGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 114815 0.76 0.277122
Target:  5'- gCGCCGCaGCACCAccuacacGGGCACCGUGa -3'
miRNA:   3'- gGCGGCGcCGUGGUc------CUUGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 113584 0.66 0.759018
Target:  5'- gCCGCCGCGcugggcgaccucGCGcCCGGGcAC-CCGcUGGc -3'
miRNA:   3'- -GGCGGCGC------------CGU-GGUCCuUGuGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 110982 0.67 0.74975
Target:  5'- aCGCCGCcuucguGCGCCuGGGGACGCUGc-- -3'
miRNA:   3'- gGCGGCGc-----CGUGG-UCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 110926 0.68 0.672833
Target:  5'- cCUGCCGCgcugGGCACC--GAGCGCCGcccGGc -3'
miRNA:   3'- -GGCGGCG----CCGUGGucCUUGUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 110245 0.74 0.324086
Target:  5'- gCGgCGCGGCGCCcgGGGGGCugCG-GGc -3'
miRNA:   3'- gGCgGCGCCGUGG--UCCUUGugGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 109821 0.72 0.452363
Target:  5'- uCCGCCGCGGCGgCCGccgaaucuGGcgUGCCGUuGGu -3'
miRNA:   3'- -GGCGGCGCCGU-GGU--------CCuuGUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 109558 0.66 0.794959
Target:  5'- aCCGCCGCGGC-CCcccu-CGCCGcUGc -3'
miRNA:   3'- -GGCGGCGCCGuGGuccuuGUGGC-ACc -5'
23793 5' -59.5 NC_005261.1 + 109055 0.66 0.803621
Target:  5'- gCCGCCagguagcccaGCGGCGCCucGGcGAucAUGCCGuUGGc -3'
miRNA:   3'- -GGCGG----------CGCCGUGG--UC-CU--UGUGGC-ACC- -5'
23793 5' -59.5 NC_005261.1 + 109006 0.69 0.584065
Target:  5'- gCGCUGCGcguuCACCGGGccgaacgcCGCCGUGGc -3'
miRNA:   3'- gGCGGCGCc---GUGGUCCuu------GUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 108748 0.74 0.337815
Target:  5'- gCGCCGCGGCGuCCGcGGcGCGCCGcgccacggcaccaUGGg -3'
miRNA:   3'- gGCGGCGCCGU-GGU-CCuUGUGGC-------------ACC- -5'
23793 5' -59.5 NC_005261.1 + 108324 0.74 0.323374
Target:  5'- gCCGCCGCGugcuccgcgacccGCGCCAGGGcCGCCGc-- -3'
miRNA:   3'- -GGCGGCGC-------------CGUGGUCCUuGUGGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.