miRNA display CGI


Results 81 - 100 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 108184 0.66 0.777231
Target:  5'- gCgGCCGCGGCuCCGGGcgcgagagcuGCGCCa--- -3'
miRNA:   3'- -GgCGGCGCCGuGGUCCu---------UGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 107689 0.75 0.317028
Target:  5'- gCCGCCGCGGC---GGGGGCGCCGc-- -3'
miRNA:   3'- -GGCGGCGCCGuggUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 107365 0.66 0.759018
Target:  5'- gUCGUCGUgGGCGCCGGG-GCGCCc--- -3'
miRNA:   3'- -GGCGGCG-CCGUGGUCCuUGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 106913 0.72 0.461272
Target:  5'- gCGCCGCGGCGCgcugCAGGGcCGCCa--- -3'
miRNA:   3'- gGCGGCGCCGUG----GUCCUuGUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 106586 0.69 0.633369
Target:  5'- gCCGCCgcGCGGCGCUccuccuGGAccucgucccagACGCCGcGGa -3'
miRNA:   3'- -GGCGG--CGCCGUGGu-----CCU-----------UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 106460 0.67 0.740386
Target:  5'- uCCGCgCG-GGCGuCCAaGAGCGCCG-GGc -3'
miRNA:   3'- -GGCG-GCgCCGU-GGUcCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 106265 0.72 0.461272
Target:  5'- gCCGCCGCuGcCGCCGGGcGGC-CCGUGc -3'
miRNA:   3'- -GGCGGCGcC-GUGGUCC-UUGuGGCACc -5'
23793 5' -59.5 NC_005261.1 + 106161 0.67 0.748818
Target:  5'- cUCGCCGCuccGCGCUaauacuaGGGGGCGCCGcgcgcgUGGc -3'
miRNA:   3'- -GGCGGCGc--CGUGG-------UCCUUGUGGC------ACC- -5'
23793 5' -59.5 NC_005261.1 + 106121 0.68 0.662994
Target:  5'- gCCgGCgCGCGcGCGCCGGcAACGCCGgacaUGGu -3'
miRNA:   3'- -GG-CG-GCGC-CGUGGUCcUUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 105216 0.69 0.623483
Target:  5'- cCCGCCGCGcGgGCCGcGGccGCgGCCGUGa -3'
miRNA:   3'- -GGCGGCGC-CgUGGU-CCu-UG-UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 104892 0.72 0.417698
Target:  5'- gCCGCCGCGuGCGCCcGGAcgcccuccaGgGCCGcGGu -3'
miRNA:   3'- -GGCGGCGC-CGUGGuCCU---------UgUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 104749 0.71 0.497796
Target:  5'- gCGCCGUucuGCACCAGGAAgGCCa--- -3'
miRNA:   3'- gGCGGCGc--CGUGGUCCUUgUGGcacc -5'
23793 5' -59.5 NC_005261.1 + 104676 0.66 0.774528
Target:  5'- gUGCUGCGGCagcGCCuGGGcCACCGccccgaagagcggcUGGa -3'
miRNA:   3'- gGCGGCGCCG---UGGuCCUuGUGGC--------------ACC- -5'
23793 5' -59.5 NC_005261.1 + 104267 0.68 0.68264
Target:  5'- gCGCCGCGGUcUCGGcGGCugCGcGGg -3'
miRNA:   3'- gGCGGCGCCGuGGUCcUUGugGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 104131 0.69 0.623483
Target:  5'- uUCGCCGCGaGCucggccGCCAGGucggccaccGCGCCGUccgcGGg -3'
miRNA:   3'- -GGCGGCGC-CG------UGGUCCu--------UGUGGCA----CC- -5'
23793 5' -59.5 NC_005261.1 + 103995 0.69 0.623483
Target:  5'- gCCGCCGCGGUcgGCCAGuauGGcgcgcGCGCUGUa- -3'
miRNA:   3'- -GGCGGCGCCG--UGGUC---CU-----UGUGGCAcc -5'
23793 5' -59.5 NC_005261.1 + 103862 0.77 0.214517
Target:  5'- gCCGCgGCGGCGgCGGGGcgGCGCCGccGGg -3'
miRNA:   3'- -GGCGgCGCCGUgGUCCU--UGUGGCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 103607 0.67 0.711798
Target:  5'- gCCGCgGCGGCAgCGcGGGAgGCgGcGGc -3'
miRNA:   3'- -GGCGgCGCCGUgGU-CCUUgUGgCaCC- -5'
23793 5' -59.5 NC_005261.1 + 103576 0.68 0.653132
Target:  5'- gCCGCCGCccGCGCCGucgcucgcCGCCGUGGc -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuu----GUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 103535 0.75 0.308028
Target:  5'- uCCGCCGCcuccucggcccccgGGC-CCAGGGGCcCCGUGc -3'
miRNA:   3'- -GGCGGCG--------------CCGuGGUCCUUGuGGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.