miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 137794 0.66 0.803621
Target:  5'- cCCGCCGCccGCGCCG---GCGCCGccccUGGu -3'
miRNA:   3'- -GGCGGCGc-CGUGGUccuUGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 36586 0.78 0.19683
Target:  5'- cCCGCCGCGGcCACCGGGGgggggcagcgcuccuGCGCCccGGc -3'
miRNA:   3'- -GGCGGCGCC-GUGGUCCU---------------UGUGGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 28758 0.78 0.209471
Target:  5'- aCGCCGCGGC--CGGGGGCGCC-UGGg -3'
miRNA:   3'- gGCGGCGCCGugGUCCUUGUGGcACC- -5'
23793 5' -59.5 NC_005261.1 + 103862 0.77 0.214517
Target:  5'- gCCGCgGCGGCGgCGGGGcgGCGCCGccGGg -3'
miRNA:   3'- -GGCGgCGCCGUgGUCCU--UGUGGCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 93678 0.77 0.219666
Target:  5'- -gGCgGCGGCGCCGgcGGGGCGCCGgcgGGu -3'
miRNA:   3'- ggCGgCGCCGUGGU--CCUUGUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 81518 0.77 0.219666
Target:  5'- gCCGCCGcCGGCGCCAGGcGCugCa-GGa -3'
miRNA:   3'- -GGCGGC-GCCGUGGUCCuUGugGcaCC- -5'
23793 5' -59.5 NC_005261.1 + 31681 0.77 0.221756
Target:  5'- -gGCCGCGGCGCgGcGGcggcugaucgugaucGACGCCGUGGa -3'
miRNA:   3'- ggCGGCGCCGUGgU-CC---------------UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 53030 0.77 0.224921
Target:  5'- gCUuCCGCGGCGCCGGGGcaGCCGUcGGg -3'
miRNA:   3'- -GGcGGCGCCGUGGUCCUugUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 8829 0.77 0.224921
Target:  5'- cCCGCCG-GGCAagggggCGGGGACagGCCGUGGg -3'
miRNA:   3'- -GGCGGCgCCGUg-----GUCCUUG--UGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 100184 0.78 0.194945
Target:  5'- aCGCCGUGGCGgCGGG-GCAgCGUGGc -3'
miRNA:   3'- gGCGGCGCCGUgGUCCuUGUgGCACC- -5'
23793 5' -59.5 NC_005261.1 + 70642 0.78 0.194945
Target:  5'- gCGCCGCGGCGCUgAGGuucgGCGCCGcGGc -3'
miRNA:   3'- gGCGGCGCCGUGG-UCCu---UGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 68131 0.78 0.194945
Target:  5'- -gGCCGCGGCGCgGcGAccGCGCCGUGGc -3'
miRNA:   3'- ggCGGCGCCGUGgUcCU--UGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 68756 0.85 0.075119
Target:  5'- cCCGCCGgGGCGCCGcGGAGCcGCCGUGu -3'
miRNA:   3'- -GGCGGCgCCGUGGU-CCUUG-UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 44875 0.83 0.08995
Target:  5'- gCCGCCGCGaGCGCCgcgGGGAugGCCG-GGg -3'
miRNA:   3'- -GGCGGCGC-CGUGG---UCCUugUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 95748 0.83 0.099633
Target:  5'- gCCGCCGCcGcCGCCGGGGGCGCCG-GGa -3'
miRNA:   3'- -GGCGGCGcC-GUGGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 123463 0.83 0.101426
Target:  5'- gCCGUCGCGGgccucccagaacucCACCAGGGACACCG-GGc -3'
miRNA:   3'- -GGCGGCGCC--------------GUGGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 80103 0.82 0.118983
Target:  5'- gCGCCGCGGUACCGGcuuGGGCGCCGcGGc -3'
miRNA:   3'- gGCGGCGCCGUGGUC---CUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 118293 0.81 0.122018
Target:  5'- gCCGCCGCgGGCACCGGGGcgcacuuccGCACCGcgcugcUGGc -3'
miRNA:   3'- -GGCGGCG-CCGUGGUCCU---------UGUGGC------ACC- -5'
23793 5' -59.5 NC_005261.1 + 3343 0.81 0.13489
Target:  5'- gCGCCGCGGCGCCcGGcGCGCCGg-- -3'
miRNA:   3'- gGCGGCGCCGUGGuCCuUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 67664 0.78 0.194945
Target:  5'- uCCGCgCGCGGCGCCAGG--CGCgGUGa -3'
miRNA:   3'- -GGCG-GCGCCGUGGUCCuuGUGgCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.