miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 80103 0.82 0.118983
Target:  5'- gCGCCGCGGUACCGGcuuGGGCGCCGcGGc -3'
miRNA:   3'- gGCGGCGCCGUGGUC---CUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 123463 0.83 0.101426
Target:  5'- gCCGUCGCGGgccucccagaacucCACCAGGGACACCG-GGc -3'
miRNA:   3'- -GGCGGCGCC--------------GUGGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 95748 0.83 0.099633
Target:  5'- gCCGCCGCcGcCGCCGGGGGCGCCG-GGa -3'
miRNA:   3'- -GGCGGCGcC-GUGGUCCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 44875 0.83 0.08995
Target:  5'- gCCGCCGCGaGCGCCgcgGGGAugGCCG-GGg -3'
miRNA:   3'- -GGCGGCGC-CGUGG---UCCUugUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 68756 0.85 0.075119
Target:  5'- cCCGCCGgGGCGCCGcGGAGCcGCCGUGu -3'
miRNA:   3'- -GGCGGCgCCGUGGU-CCUUG-UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 103862 0.77 0.214517
Target:  5'- gCCGCgGCGGCGgCGGGGcgGCGCCGccGGg -3'
miRNA:   3'- -GGCGgCGCCGUgGUCCU--UGUGGCa-CC- -5'
23793 5' -59.5 NC_005261.1 + 93678 0.77 0.219666
Target:  5'- -gGCgGCGGCGCCGgcGGGGCGCCGgcgGGu -3'
miRNA:   3'- ggCGgCGCCGUGGU--CCUUGUGGCa--CC- -5'
23793 5' -59.5 NC_005261.1 + 83489 0.76 0.247014
Target:  5'- gCCGCCGUaGaGCGCCAGGcgcgcGCGCCgGUGGa -3'
miRNA:   3'- -GGCGGCG-C-CGUGGUCCu----UGUGG-CACC- -5'
23793 5' -59.5 NC_005261.1 + 16263 0.76 0.24644
Target:  5'- gCCGCCGgGGCcgggcuucggcucGCCcggGGGGGCGCCGUcGGg -3'
miRNA:   3'- -GGCGGCgCCG-------------UGG---UCCUUGUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 94078 0.77 0.241328
Target:  5'- aCCGCCGC--CGCCGGGAACGCCGc-- -3'
miRNA:   3'- -GGCGGCGccGUGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 33585 0.77 0.241328
Target:  5'- gCC-CCGCGaGCACCAGGGgcgGCGCCGgcgcGGg -3'
miRNA:   3'- -GGcGGCGC-CGUGGUCCU---UGUGGCa---CC- -5'
23793 5' -59.5 NC_005261.1 + 43796 0.77 0.23575
Target:  5'- gCGCCGCgggugagggGGCGCCGGGcGCGCCcuccGUGGa -3'
miRNA:   3'- gGCGGCG---------CCGUGGUCCuUGUGG----CACC- -5'
23793 5' -59.5 NC_005261.1 + 98129 0.77 0.235199
Target:  5'- aCGCCGCGGCACCGGcGGCcgucggcggcaagGCCGcGGg -3'
miRNA:   3'- gGCGGCGCCGUGGUCcUUG-------------UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 102947 0.77 0.230282
Target:  5'- gCCGCUGCGGCggcgGCCGcGGGCGCCGcGGg -3'
miRNA:   3'- -GGCGGCGCCG----UGGUcCUUGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 2604 0.77 0.230282
Target:  5'- gCCGCCGuCGGCGgCGGGGcCGCCG-GGc -3'
miRNA:   3'- -GGCGGC-GCCGUgGUCCUuGUGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 29240 0.77 0.224921
Target:  5'- aCGCCGCGGCGCCGcgcgacGGGcCGCCGccgcUGGa -3'
miRNA:   3'- gGCGGCGCCGUGGU------CCUuGUGGC----ACC- -5'
23793 5' -59.5 NC_005261.1 + 8829 0.77 0.224921
Target:  5'- cCCGCCG-GGCAagggggCGGGGACagGCCGUGGg -3'
miRNA:   3'- -GGCGGCgCCGUg-----GUCCUUG--UGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 53030 0.77 0.224921
Target:  5'- gCUuCCGCGGCGCCGGGGcaGCCGUcGGg -3'
miRNA:   3'- -GGcGGCGCCGUGGUCCUugUGGCA-CC- -5'
23793 5' -59.5 NC_005261.1 + 31681 0.77 0.221756
Target:  5'- -gGCCGCGGCGCgGcGGcggcugaucgugaucGACGCCGUGGa -3'
miRNA:   3'- ggCGGCGCCGUGgU-CC---------------UUGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 81518 0.77 0.219666
Target:  5'- gCCGCCGcCGGCGCCAGGcGCugCa-GGa -3'
miRNA:   3'- -GGCGGC-GCCGUGGUCCuUGugGcaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.