miRNA display CGI


Results 101 - 120 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23793 5' -59.5 NC_005261.1 + 72476 0.75 0.317028
Target:  5'- gCGCgagCGCGGCcagcGCCAGGAGCGCCGc-- -3'
miRNA:   3'- gGCG---GCGCCG----UGGUCCUUGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 44289 0.74 0.323374
Target:  5'- gCCGCCaGCGGCggGCCAGGGccgcugcccgcggGCGCCGcagacgGGg -3'
miRNA:   3'- -GGCGG-CGCCG--UGGUCCU-------------UGUGGCa-----CC- -5'
23793 5' -59.5 NC_005261.1 + 108324 0.74 0.323374
Target:  5'- gCCGCCGCGugcuccgcgacccGCGCCAGGGcCGCCGc-- -3'
miRNA:   3'- -GGCGGCGC-------------CGUGGUCCUuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 110245 0.74 0.324086
Target:  5'- gCGgCGCGGCGCCcgGGGGGCugCG-GGc -3'
miRNA:   3'- gGCgGCGCCGUGG--UCCUUGugGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 108748 0.74 0.337815
Target:  5'- gCGCCGCGGCGuCCGcGGcGCGCCGcgccacggcaccaUGGg -3'
miRNA:   3'- gGCGGCGCCGU-GGU-CCuUGUGGC-------------ACC- -5'
23793 5' -59.5 NC_005261.1 + 127692 0.75 0.296554
Target:  5'- gCUGCCccgGCGGCGCCggAGGAGCuGCgCGUGGc -3'
miRNA:   3'- -GGCGG---CGCCGUGG--UCCUUG-UG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 53558 0.75 0.29589
Target:  5'- gCGCCGCGGC-CCAGGcGCacuagcgGCCGcGGg -3'
miRNA:   3'- gGCGGCGCCGuGGUCCuUG-------UGGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 117536 0.76 0.247014
Target:  5'- uCCaCCGCGGCGCCggAGGGGCugACCGUGu -3'
miRNA:   3'- -GGcGGCGCCGUGG--UCCUUG--UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 127856 0.76 0.256935
Target:  5'- gCgGUCGCGGCGCCAGGGcacgagcgggagucGCGCCGg-- -3'
miRNA:   3'- -GgCGGCGCCGUGGUCCU--------------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 2549 0.76 0.25872
Target:  5'- gCGCCGCGGCGCUGGGcGCggGCgUGUGGu -3'
miRNA:   3'- gGCGGCGCCGUGGUCCuUG--UG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 71610 0.76 0.25872
Target:  5'- gCCGCCGCGGC-CCGGGcGCGggcCCG-GGc -3'
miRNA:   3'- -GGCGGCGCCGuGGUCCuUGU---GGCaCC- -5'
23793 5' -59.5 NC_005261.1 + 31940 0.76 0.26474
Target:  5'- uCUGCCGCGGCGCCAacgugcgcuACACgGUGGc -3'
miRNA:   3'- -GGCGGCGCCGUGGUccu------UGUGgCACC- -5'
23793 5' -59.5 NC_005261.1 + 60247 0.76 0.270874
Target:  5'- uCCGCCGCGGC---GGGAGCggcgGCCGUGa -3'
miRNA:   3'- -GGCGGCGCCGuggUCCUUG----UGGCACc -5'
23793 5' -59.5 NC_005261.1 + 32543 0.76 0.270874
Target:  5'- cCCgGCCGCGGCG-CGGGccGGCGCgCGUGGa -3'
miRNA:   3'- -GG-CGGCGCCGUgGUCC--UUGUG-GCACC- -5'
23793 5' -59.5 NC_005261.1 + 75857 0.76 0.270874
Target:  5'- gCGCCGaCGGCgGCCccGAcgGCGCCGUGGg -3'
miRNA:   3'- gGCGGC-GCCG-UGGucCU--UGUGGCACC- -5'
23793 5' -59.5 NC_005261.1 + 30979 0.76 0.275236
Target:  5'- cCCGCCGCGGCgcaagcgcaagucgGCCGGGGccaggggcccgGCGCCGg-- -3'
miRNA:   3'- -GGCGGCGCCG--------------UGGUCCU-----------UGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 114815 0.76 0.277122
Target:  5'- gCGCCGCaGCACCAccuacacGGGCACCGUGa -3'
miRNA:   3'- gGCGGCGcCGUGGUc------CUUGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 51424 0.75 0.283484
Target:  5'- aCCGCCuGCugGGCcCCGGGcGCGCCGUGa -3'
miRNA:   3'- -GGCGG-CG--CCGuGGUCCuUGUGGCACc -5'
23793 5' -59.5 NC_005261.1 + 33304 0.75 0.289961
Target:  5'- cCCGUCGCGGgACCAGGAcCGCUGc-- -3'
miRNA:   3'- -GGCGGCGCCgUGGUCCUuGUGGCacc -5'
23793 5' -59.5 NC_005261.1 + 119553 0.75 0.292584
Target:  5'- cCCGCCGCGGgGCCGcaaguGGAugcgcugcgagcgcgAgACCGUGGc -3'
miRNA:   3'- -GGCGGCGCCgUGGU-----CCU---------------UgUGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.